Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NKG37_RS17135 Genome accession   NZ_CP100420
Coordinates   3624208..3625251 (+) Length   347 a.a.
NCBI ID   WP_016201201.1    Uniprot ID   A0A7Y0K7W6
Organism   Niallia sp. RD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3619208..3630251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKG37_RS17115 (NKG37_17115) - 3620112..3620903 (+) 792 WP_016201196.1 YmfK family protein -
  NKG37_RS17120 (NKG37_17120) - 3620923..3621801 (+) 879 WP_040342572.1 RodZ family helix-turn-helix domain-containing protein -
  NKG37_RS17125 (NKG37_17125) pgsA 3621916..3622494 (+) 579 WP_254414994.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NKG37_RS17130 (NKG37_17130) cinA 3622778..3624019 (+) 1242 WP_254414995.1 competence/damage-inducible protein A Machinery gene
  NKG37_RS17135 (NKG37_17135) recA 3624208..3625251 (+) 1044 WP_016201201.1 recombinase RecA Machinery gene
  NKG37_RS17140 (NKG37_17140) rny 3625764..3627332 (+) 1569 WP_016201202.1 ribonuclease Y -
  NKG37_RS17145 (NKG37_17145) - 3627476..3628273 (+) 798 WP_016201203.1 TIGR00282 family metallophosphoesterase -
  NKG37_RS17150 (NKG37_17150) spoVS 3628527..3628787 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -
  NKG37_RS17155 (NKG37_17155) - 3629222..3630145 (+) 924 WP_016201205.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37717.10 Da        Isoelectric Point: 4.9964

>NTDB_id=705036 NKG37_RS17135 WP_016201201.1 3624208..3625251(+) (recA) [Niallia sp. RD1]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQADKVISTSPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGTDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYNDERLGQGRENAKLFLKENVEMRLEIQKK
IRDHYGLDKEVPLKPENDDQEQFELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=705036 NKG37_RS17135 WP_016201201.1 3624208..3625251(+) (recA) [Niallia sp. RD1]
TTGAGTGATCGTCAAGCTGCATTAGAAATGGCGTTAAAACAAATAGAAAAGCAATTCGGTAAAGGTAGTATCATGAAGCT
GGGAGAGCAAGCTGATAAAGTCATTTCTACTAGTCCAAGTGGATCGTTAGCTTTAGATGCAGCCCTAGGTGTTGGTGGAT
ATCCAAGAGGTCGTATCGTTGAAATATATGGTCCAGAAAGTTCAGGTAAAACAACAGTAGCACTACATGCTATTGCTGAG
GTTCAGGCTAATGGCGGACAAGCAGCATTTATTGATGCAGAGCATGCATTAGACCCAGTTTATGCACAAAAGCTTGGCGT
TAATATTGATGAGTTATTACTTTCCCAACCAGATACAGGGGAACAAGCATTAGAAATTGCAGAAGCTTTAGTTCGAAGTG
GAGCAGTTGATATTCTAGTAATTGACTCTGTAGCAGCACTTGTACCAAAAGCGGAGATTGAAGGAGAAATGGGAGATTCT
CACGTTGGACTTCAAGCACGTTTAATGTCACAGGCTCTTCGTAAATTATCTGGAGCAATTAATAAATCAAAAACGATTGC
TATTTTTATCAACCAAATTCGTGAAAAAGTTGGAGTAATGTTCGGAAATCCTGAAACAACTCCTGGTGGTCGTGCGTTGA
AATTCTATTCATCTGTTCGTTTAGAAGTGCGTCGTGCAGAAACGCTAAAACAAGGGACAGATATGGTAGGGAACAAGACA
AAAATTAAAGTTGTAAAAAATAAAGTTGCACCACCTTTCAAAGTGGCAGAAGTTGATATCATGTATGGAGAAGGTATCTC
TAAAGAAGGCGAGATAATTGACCTTGGTTCAGAACTTGATATTGTTCAGAAGAGCGGAGCTTGGTATTCCTATAATGACG
AAAGATTAGGACAAGGCCGAGAAAATGCGAAGCTTTTCTTAAAAGAAAATGTAGAAATGCGCCTAGAAATTCAAAAGAAA
ATTCGCGACCATTACGGGCTAGATAAAGAAGTACCATTGAAGCCTGAAAATGACGACCAAGAACAATTTGAATTAATCGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0K7W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.329

94.524

0.844
  recA Latilactobacillus sakei subsp. sakei 23K

74.487

98.271

0.732
  recA Streptococcus mitis NCTC 12261

66.667

100

0.674
  recA Streptococcus mitis SK321

66.667

100

0.674
  recA Streptococcus pneumoniae R6

70

95.101

0.666
  recA Streptococcus pneumoniae Rx1

70

95.101

0.666
  recA Streptococcus pneumoniae D39

70

95.101

0.666
  recA Streptococcus pneumoniae TIGR4

70

95.101

0.666
  recA Streptococcus mutans UA159

69.277

95.677

0.663
  recA Lactococcus lactis subsp. cremoris KW2

68.452

96.83

0.663
  recA Streptococcus pyogenes NZ131

68.902

94.524

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.776

96.542

0.625
  recA Vibrio cholerae strain A1552

64.776

96.542

0.625
  recA Neisseria gonorrhoeae strain FA1090

65.455

95.101

0.622
  recA Neisseria gonorrhoeae MS11

65.455

95.101

0.622
  recA Neisseria gonorrhoeae MS11

65.455

95.101

0.622
  recA Ralstonia pseudosolanacearum GMI1000

68.371

90.202

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.17

98.271

0.611
  recA Helicobacter pylori 26695

63.095

96.83

0.611
  recA Helicobacter pylori strain NCTC11637

63.095

96.83

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.236

0.602
  recA Glaesserella parasuis strain SC1401

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

63.438

92.219

0.585
  recA Acinetobacter baumannii D1279779

62.112

92.795

0.576
  recA Acinetobacter baylyi ADP1

61.801

92.795

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

92.219

0.571