Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NKG37_RS17130 Genome accession   NZ_CP100420
Coordinates   3622778..3624019 (+) Length   413 a.a.
NCBI ID   WP_254414995.1    Uniprot ID   -
Organism   Niallia sp. RD1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3617778..3629019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKG37_RS17105 (NKG37_17105) - 3617840..3618097 (+) 258 WP_016201195.1 DUF3243 domain-containing protein -
  NKG37_RS17110 (NKG37_17110) - 3618647..3619876 (+) 1230 WP_100525939.1 IS110 family transposase -
  NKG37_RS17115 (NKG37_17115) - 3620112..3620903 (+) 792 WP_016201196.1 YmfK family protein -
  NKG37_RS17120 (NKG37_17120) - 3620923..3621801 (+) 879 WP_040342572.1 RodZ family helix-turn-helix domain-containing protein -
  NKG37_RS17125 (NKG37_17125) pgsA 3621916..3622494 (+) 579 WP_254414994.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NKG37_RS17130 (NKG37_17130) cinA 3622778..3624019 (+) 1242 WP_254414995.1 competence/damage-inducible protein A Machinery gene
  NKG37_RS17135 (NKG37_17135) recA 3624208..3625251 (+) 1044 WP_016201201.1 recombinase RecA Machinery gene
  NKG37_RS17140 (NKG37_17140) rny 3625764..3627332 (+) 1569 WP_016201202.1 ribonuclease Y -
  NKG37_RS17145 (NKG37_17145) - 3627476..3628273 (+) 798 WP_016201203.1 TIGR00282 family metallophosphoesterase -
  NKG37_RS17150 (NKG37_17150) spoVS 3628527..3628787 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45287.91 Da        Isoelectric Point: 5.1049

>NTDB_id=705035 NKG37_RS17130 WP_254414995.1 3622778..3624019(+) (cinA) [Niallia sp. RD1]
MNAEIIAVGSELLLGQIANTNAQFISKHLADLGVNVYYHTVVGDNAGRLKEAIKIAETRAQLLIFSGGLGPTKDDLTKET
IANYIGKELVFDETALQSIEDYFVRTKRTMTENNKKQALVLEECDVLPNDHGMAPGMFLKKDDHFYMLLPGPPKEIQPMF
IKYGFPALQKQMTSKDVIVSRVLRFFGIGESLLETKIEDLIDAQTNPTIAPLAGDGEVTLRITCKHDSVTEADKLIAKTE
EEIFARVGEFFYGYDDTTLMNELSHVLLKKKLTLAAAESLTGGLFQQEITSIPGAGNIFQGGVVCYTNEVKHQILHVKES
TIQEHGVVSEQCAKELAENVAQLLNADIGISFTGVAGPDELEGNPVGTVYIGIAKKGESTKVEALALSGTRAGNRVRSVK
YGQYFLLKMLENR

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=705035 NKG37_RS17130 WP_254414995.1 3622778..3624019(+) (cinA) [Niallia sp. RD1]
ATGAATGCAGAGATTATCGCTGTTGGCTCAGAGTTATTACTAGGGCAAATAGCTAATACAAATGCACAATTTATCTCTAA
ACATTTAGCAGACTTAGGAGTAAATGTTTATTATCATACTGTTGTTGGAGATAATGCTGGTCGTTTAAAGGAAGCAATTA
AAATTGCAGAAACACGGGCGCAATTACTTATTTTCTCAGGAGGGCTTGGCCCCACAAAGGATGATTTAACGAAAGAGACG
ATTGCTAATTATATAGGAAAAGAGCTTGTCTTTGATGAAACAGCACTACAATCGATTGAAGACTATTTTGTGCGGACAAA
GCGCACAATGACAGAAAATAATAAAAAACAAGCATTAGTTTTAGAAGAATGTGATGTTCTTCCAAATGACCATGGGATGG
CTCCTGGAATGTTTCTAAAAAAGGACGATCATTTTTATATGCTTTTACCAGGACCACCTAAAGAAATTCAGCCGATGTTT
ATAAAATACGGATTTCCAGCGCTTCAGAAACAGATGACAAGTAAAGATGTAATTGTTTCTCGCGTGCTGCGCTTCTTCGG
AATTGGTGAATCGTTATTAGAAACAAAAATTGAAGATTTAATTGATGCACAGACAAACCCTACCATTGCACCGCTTGCGG
GAGATGGCGAGGTAACACTACGTATAACATGTAAGCATGATTCGGTAACAGAAGCAGATAAATTAATTGCAAAGACAGAA
GAGGAAATATTTGCGCGCGTAGGCGAATTTTTCTATGGCTATGATGATACAACTTTAATGAATGAACTTTCTCATGTGTT
ATTAAAGAAAAAATTGACCTTAGCAGCGGCAGAAAGTCTAACAGGCGGTTTATTCCAGCAGGAAATTACAAGCATACCTG
GCGCTGGGAACATCTTTCAAGGTGGTGTTGTCTGTTATACGAATGAAGTAAAGCACCAAATTCTTCATGTAAAAGAGTCA
ACGATACAAGAGCATGGTGTTGTAAGCGAGCAATGCGCAAAAGAGTTGGCTGAAAATGTTGCCCAATTACTAAATGCGGA
TATTGGAATAAGCTTTACAGGGGTTGCAGGTCCAGATGAATTAGAAGGTAACCCGGTTGGTACGGTCTATATTGGGATTG
CCAAAAAAGGCGAGTCGACAAAAGTAGAGGCGTTAGCTTTAAGTGGAACAAGAGCCGGCAATCGAGTTAGAAGTGTGAAA
TACGGTCAATACTTTCTATTAAAAATGTTGGAAAATAGATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.314

99.516

0.61
  cinA Streptococcus mitis SK321

46.394

100

0.467
  cinA Streptococcus pneumoniae TIGR4

46.154

100

0.465
  cinA Streptococcus pneumoniae Rx1

45.913

100

0.462
  cinA Streptococcus pneumoniae R6

45.913

100

0.462
  cinA Streptococcus mitis NCTC 12261

45.673

100

0.46
  cinA Streptococcus pneumoniae D39

45.673

100

0.46
  cinA Streptococcus mutans UA159

45.658

97.579

0.446
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38