Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EL335_RS12725 Genome accession   NZ_AP018718
Coordinates   2530280..2531299 (+) Length   339 a.a.
NCBI ID   WP_126447477.1    Uniprot ID   -
Organism   Sulfuricystis multivorans strain J5B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2525280..2536299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL335_RS12690 - 2525535..2526062 (-) 528 WP_126447464.1 GTP-binding protein -
  EL335_RS12695 ribBA 2526230..2527330 (+) 1101 WP_126447466.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  EL335_RS12700 ribH 2527327..2527833 (+) 507 WP_126447468.1 6,7-dimethyl-8-ribityllumazine synthase -
  EL335_RS12705 nusB 2527830..2528297 (+) 468 WP_126447470.1 transcription antitermination factor NusB -
  EL335_RS12710 thiL 2528310..2529245 (+) 936 WP_126447471.1 thiamine-phosphate kinase -
  EL335_RS12715 - 2529252..2529755 (+) 504 WP_126447473.1 phosphatidylglycerophosphatase A -
  EL335_RS12720 - 2529757..2530251 (+) 495 WP_126447475.1 nicotinamide-nucleotide amidohydrolase family protein -
  EL335_RS12725 recA 2530280..2531299 (+) 1020 WP_126447477.1 recombinase RecA Machinery gene
  EL335_RS12730 recX 2531292..2531720 (+) 429 WP_284155511.1 recombination regulator RecX -
  EL335_RS12735 lptB 2531717..2532451 (+) 735 WP_126447481.1 LPS export ABC transporter ATP-binding protein -
  EL335_RS12740 rpoN/rpoN1 2532457..2533902 (+) 1446 WP_126447483.1 RNA polymerase factor sigma-54 Machinery gene
  EL335_RS12745 raiA 2533916..2534227 (+) 312 WP_126447485.1 ribosome-associated translation inhibitor RaiA -
  EL335_RS12750 ptsN 2534356..2534817 (+) 462 WP_126447487.1 PTS IIA-like nitrogen regulatory protein PtsN -
  EL335_RS12755 hprK 2534805..2535743 (+) 939 WP_126447903.1 HPr(Ser) kinase/phosphatase -
  EL335_RS12760 - 2535815..2536237 (+) 423 WP_126447489.1 DUF971 domain-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36197.66 Da        Isoelectric Point: 5.5344

>NTDB_id=70463 EL335_RS12725 WP_126447477.1 2530280..2531299(+) (recA) [Sulfuricystis multivorans strain J5B]
MDDNKAKALAAALAQIEKQFGKGSIMKMGEGQIENDLQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLHVV
AEVQKAGGVAAYIDAENALDPVYAGKLGVNVPDLLISQPDTGEQALEIADMLVRSGGVDLIVIDSVAALVPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRVGSIKKGEEVIGN
ETKVKVVKNKVAPPFKEAHFDILYGEGISREGEIVELGVEHKIIEKSGAWYAYNGEKIGQGKDNAREYLREHPEIAREIE
NKIRAAVGVAALSAPLAGD

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=70463 EL335_RS12725 WP_126447477.1 2530280..2531299(+) (recA) [Sulfuricystis multivorans strain J5B]
ATGGACGACAACAAGGCCAAGGCGCTCGCGGCGGCGCTCGCGCAGATCGAAAAGCAGTTCGGCAAAGGCTCCATCATGAA
GATGGGCGAGGGCCAGATCGAAAACGATCTGCAGGTGGTGTCGACCGGCTCGCTGGGCCTGGACATCGCACTCGGTGTCG
GCGGATTGCCGCGCGGACGCGTCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAGACGACGCTATGCCTGCATGTCGTC
GCCGAAGTGCAGAAGGCTGGTGGTGTGGCCGCTTACATCGATGCCGAAAATGCGCTCGACCCGGTCTATGCCGGCAAGCT
TGGCGTCAATGTCCCCGATCTGCTGATCTCCCAGCCCGATACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCCGGCGGCGTCGATCTGATCGTCATCGACTCGGTCGCCGCGTTGGTGCCGAAAGCCGAGATCGAGGGCGAAATGGGC
GACCAGCTGCCCGGCCTGCAGGCGCGGCTGATGAGCCAGGCACTACGTAAGCTCACCGCCAACATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACCACCACCGGCGGCAATG
CGTTGAAGTTCTATGCCTCGGTGCGCATGGACATCCGCCGCGTAGGCAGCATCAAGAAGGGCGAAGAGGTGATCGGCAAC
GAAACCAAAGTGAAGGTCGTCAAGAACAAGGTGGCGCCGCCCTTCAAGGAAGCCCATTTCGACATCCTCTACGGCGAGGG
CATCTCGCGCGAAGGCGAGATCGTCGAACTGGGCGTCGAGCACAAGATCATCGAGAAGTCCGGTGCCTGGTACGCCTACA
ACGGTGAAAAGATCGGCCAAGGCAAGGACAACGCGCGCGAATACCTGAGGGAGCACCCGGAGATCGCGCGCGAGATCGAA
AACAAGATCCGCGCCGCGGTCGGGGTAGCGGCATTGAGCGCTCCGCTTGCGGGTGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.445

94.1

0.776
  recA Neisseria gonorrhoeae MS11

76.292

97.05

0.74
  recA Neisseria gonorrhoeae MS11

76.292

97.05

0.74
  recA Neisseria gonorrhoeae strain FA1090

76.292

97.05

0.74
  recA Pseudomonas stutzeri DSM 10701

71.014

100

0.723
  recA Acinetobacter baylyi ADP1

68.437

100

0.684
  recA Glaesserella parasuis strain SC1401

71.739

94.985

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.296

95.575

0.681
  recA Vibrio cholerae strain A1552

71.296

95.575

0.681
  recA Acinetobacter baumannii D1279779

69.444

95.575

0.664
  recA Latilactobacillus sakei subsp. sakei 23K

65.854

96.755

0.637
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

97.05

0.631
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

96.755

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.664

98.23

0.625
  recA Lactococcus lactis subsp. cremoris KW2

64.832

96.46

0.625
  recA Helicobacter pylori 26695

62.018

99.41

0.617
  recA Streptococcus mutans UA159

63.142

97.64

0.617
  recA Streptococcus pneumoniae R6

63.222

97.05

0.614
  recA Streptococcus pneumoniae Rx1

63.222

97.05

0.614
  recA Streptococcus pneumoniae D39

63.222

97.05

0.614
  recA Streptococcus pneumoniae TIGR4

63.222

97.05

0.614
  recA Helicobacter pylori strain NCTC11637

61.721

99.41

0.614
  recA Streptococcus pyogenes NZ131

62.424

97.345

0.608
  recA Streptococcus mitis NCTC 12261

62.31

97.05

0.605
  recA Streptococcus mitis SK321

62.006

97.05

0.602
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.728

95.575

0.59

Multiple sequence alignment