Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H7675_RS03945 Genome accession   NZ_AP023389
Coordinates   751987..752949 (+) Length   320 a.a.
NCBI ID   WP_184004934.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain KUN-0012590     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746987..757949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7675_RS03925 (KUN2590_07160) - 747695..748915 (-) 1221 WP_002983986.1 DUF3114 domain-containing protein -
  H7675_RS03930 (KUN2590_07170) queA 748922..749950 (-) 1029 WP_184004931.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  H7675_RS03935 (KUN2590_07180) nagB 750152..750856 (+) 705 WP_002995779.1 glucosamine-6-phosphate deaminase -
  H7675_RS03940 (KUN2590_07190) - 750975..751691 (+) 717 WP_002995774.1 pseudouridine synthase -
  H7675_RS03945 (KUN2590_07200) coiA 751987..752949 (+) 963 WP_184004934.1 competence protein CoiA Machinery gene
  H7675_RS03950 (KUN2590_07210) pepF 752962..754767 (+) 1806 WP_011054652.1 oligoendopeptidase F Regulator
  H7675_RS03955 (KUN2590_07220) - 755143..756339 (+) 1197 WP_002995765.1 OFA family MFS transporter -
  H7675_RS03960 (KUN2590_07230) - 756405..757112 (+) 708 WP_047235770.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37791.21 Da        Isoelectric Point: 10.2848

>NTDB_id=70464 H7675_RS03945 WP_184004934.1 751987..752949(+) (coiA) [Streptococcus pyogenes strain KUN-0012590]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLSYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=70464 H7675_RS03945 WP_184004934.1 751987..752949(+) (coiA) [Streptococcus pyogenes strain KUN-0012590]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTATCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.581

96.875

0.413
  coiA Streptococcus pneumoniae Rx1

41.29

96.875

0.4
  coiA Streptococcus pneumoniae D39

41.29

96.875

0.4
  coiA Streptococcus pneumoniae R6

41.29

96.875

0.4
  coiA Streptococcus pneumoniae TIGR4

41.29

96.875

0.4
  coiA Lactococcus lactis subsp. cremoris KW2

39.024

100

0.4

Multiple sequence alignment