Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NI383_RS20625 Genome accession   NZ_CP099955
Coordinates   2701795..2702838 (-) Length   347 a.a.
NCBI ID   WP_274037566.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2696795..2707838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS20605 (NI383_20760) csrA 2696799..2696996 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  NI383_RS20610 (NI383_20765) - 2697089..2698276 (-) 1188 WP_005478552.1 aspartate kinase -
  NI383_RS20615 (NI383_20770) alaS 2698479..2701061 (-) 2583 WP_005455546.1 alanine--tRNA ligase -
  NI383_RS20620 (NI383_20775) recX 2701204..2701671 (-) 468 WP_005455548.1 recombination regulator RecX -
  NI383_RS20625 (NI383_20780) recA 2701795..2702838 (-) 1044 WP_274037566.1 recombinase RecA Machinery gene
  NI383_RS20630 (NI383_20785) pncC 2703039..2703521 (-) 483 WP_029816369.1 nicotinamide-nucleotide amidase -
  NI383_RS20635 (NI383_20790) mutS 2703606..2706167 (+) 2562 WP_020835389.1 DNA mismatch repair protein MutS -
  NI383_RS20640 (NI383_20795) rpoS 2706246..2707235 (-) 990 WP_315868307.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37420.86 Da        Isoelectric Point: 5.1850

>NTDB_id=702896 NI383_RS20625 WP_274037566.1 2701795..2702838(-) (recA) [Vibrio parahaemolyticus strain Isc4A]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPETAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=702896 NI383_RS20625 WP_274037566.1 2701795..2702838(-) (recA) [Vibrio parahaemolyticus strain Isc4A]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTTGAGATTTATGGTCCAGAATCTTCAGGTAAAACAACACTAACTCTTGAACTTATTGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTCCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCCGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAACCGCGAAAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.354

100

0.914
  recA Vibrio cholerae strain A1552

91.354

100

0.914
  recA Acinetobacter baylyi ADP1

72.012

98.847

0.712
  recA Pseudomonas stutzeri DSM 10701

72.647

97.983

0.712
  recA Acinetobacter baumannii D1279779

74.39

94.524

0.703
  recA Glaesserella parasuis strain SC1401

70.552

93.948

0.663
  recA Neisseria gonorrhoeae MS11

65.616

100

0.66
  recA Neisseria gonorrhoeae MS11

65.616

100

0.66
  recA Neisseria gonorrhoeae strain FA1090

65.616

100

0.66
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.625

0.64
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

91.931

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Streptococcus mitis NCTC 12261

61.61

93.084

0.573
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Streptococcus mutans UA159

60.615

93.66

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.681

93.084

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

92.507

0.562