Detailed information NTG0702898

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NI383_RS20640
• Genome accession: NZ_CP099955
• Coordinates: 2706246..2707235 (-)
• Length: 329 a.a.
• NCBI ID: WP_315868307.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain Isc4A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2701246..2712235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI383_RS20625 (NI383_20780)	recA	2701795..2702838 (-)	1044	WP_274037566.1	recombinase RecA	Machinery gene
NI383_RS20630 (NI383_20785)	pncC	2703039..2703521 (-)	483	WP_029816369.1	nicotinamide-nucleotide amidase	-
NI383_RS20635 (NI383_20790)	mutS	2703606..2706167 (+)	2562	WP_020835389.1	DNA mismatch repair protein MutS	-
NI383_RS20640 (NI383_20795)	rpoS	2706246..2707235 (-)	990	WP_315868307.1	RNA polymerase sigma factor RpoS	Regulator
NI383_RS20645 (NI383_20800)	-	2707316..2708239 (-)	924	WP_024699751.1	peptidoglycan DD-metalloendopeptidase family protein	-
NI383_RS20650 (NI383_20805)	-	2708254..2708880 (-)	627	WP_029826206.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NI383_RS20655 (NI383_20810)	surE	2708880..2709656 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
NI383_RS20660 (NI383_20815)	truD	2709656..2710699 (-)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
NI383_RS20665 (NI383_20820)	ispF	2710746..2711222 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NI383_RS20670 (NI383_20825)	ispD	2711240..2711944 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NI383_RS20675 (NI383_20830)	ftsB	2711946..2712227 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37587.41 Da
• Isoelectric Point: 4.6096

>NTDB_id=702898 NI383_RS20640 WP_315868307.1 2706246..2707235(-) (rpoS) [Vibrio parahaemolyticus strain Isc4A]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=702898 NI383_RS20640 WP_315868307.1 2706246..2707235(-) (rpoS) [Vibrio parahaemolyticus strain Isc4A]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAATAAAAGCCTAGATGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851