Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JMUB898_RS07960 Genome accession   NZ_AP018587
Coordinates   1670891..1671943 (-) Length   350 a.a.
NCBI ID   WP_037541417.1    Uniprot ID   -
Organism   Staphylococcus caprae strain JMUB898     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1665891..1676943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB898_RS07945 (JMUB898_1600) - 1667606..1668400 (-) 795 WP_044466279.1 TIGR00282 family metallophosphoesterase -
  JMUB898_RS07950 (JMUB898_1601) - 1668563..1668778 (+) 216 WP_002442610.1 hypothetical protein -
  JMUB898_RS07955 (JMUB898_1602) rny 1669089..1670648 (-) 1560 WP_002442608.1 ribonuclease Y -
  JMUB898_RS07960 (JMUB898_1603) recA 1670891..1671943 (-) 1053 WP_037541417.1 recombinase RecA Machinery gene
  JMUB898_RS07965 (JMUB898_1604) - 1672108..1673259 (-) 1152 WP_002442605.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  JMUB898_RS07970 (JMUB898_1605) pgsA 1673445..1674026 (-) 582 WP_002442602.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JMUB898_RS07975 (JMUB898_1606) - 1674058..1674450 (-) 393 WP_002442599.1 RodZ family helix-turn-helix domain-containing protein -
  JMUB898_RS07980 (JMUB898_1607) - 1674469..1675296 (-) 828 WP_002442598.1 YmfK family protein -
  JMUB898_RS07985 (JMUB898_1608) ymfI 1675481..1676185 (-) 705 WP_002442596.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38072.95 Da        Isoelectric Point: 4.9352

>NTDB_id=70213 JMUB898_RS07960 WP_037541417.1 1670891..1671943(-) (recA) [Staphylococcus caprae strain JMUB898]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVEETESEEDTPKTLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=70213 JMUB898_RS07960 WP_037541417.1 1670891..1671943(-) (recA) [Staphylococcus caprae strain JMUB898]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTCTCAAGCACATCAAGTGGTTCTGTCACAGTGGATAACGCACTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCA
GAAGTACAAAAAAATGGAGGCGTAGCAGCTTTCATTGATGCTGAACATGCGCTTGACCCTGTTTATGCTCAAGCATTAGG
TGTAGATATTGATAATCTATATTTATCTCAACCTGATCACGGTGAACAAGGTCTAGAAATTGCTGAAGCTTTTGTTCGAA
GCGGTGCCGTTGATATTGTAGTTGTCGATTCTGTAGCTGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTCGGCTTACAAGCAAGATTAATGTCTCAAGCGTTAAGAAAATTATCAGGTGCAATTTCTAAATCTAATACAAC
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGCGGTCGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTAAGAAGAGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCTTTCAGAGTGGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACTTAGGTGTCGAAAACGACATTGTAGATAAATCTGGTGCATGGTACTCATATAATG
GGGAAAGAATGGGCCAAGGTAAGGAAAATGTTAAAAACTACTTAAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAACTACGTGAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAAACTGAATCTGAAGAAGATACGCCTAAAACTTTATT
TGATGAAGAGTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.301

93.143

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

70.262

98

0.689
  recA Streptococcus pneumoniae Rx1

65.517

99.429

0.651
  recA Streptococcus pneumoniae D39

65.517

99.429

0.651
  recA Streptococcus pneumoniae R6

65.517

99.429

0.651
  recA Streptococcus pneumoniae TIGR4

65.517

99.429

0.651
  recA Streptococcus pyogenes NZ131

68.997

94

0.649
  recA Streptococcus mitis NCTC 12261

66.082

97.714

0.646
  recA Streptococcus mutans UA159

65.407

98.286

0.643
  recA Streptococcus mitis SK321

65.789

97.714

0.643
  recA Acinetobacter baylyi ADP1

64.058

98.571

0.631
  recA Neisseria gonorrhoeae MS11

64.327

97.714

0.629
  recA Neisseria gonorrhoeae strain FA1090

64.327

97.714

0.629
  recA Neisseria gonorrhoeae MS11

64.327

97.714

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.223

97.429

0.626
  recA Lactococcus lactis subsp. cremoris KW2

66.163

94.571

0.626
  recA Acinetobacter baumannii D1279779

66.258

93.143

0.617
  recA Helicobacter pylori 26695

64.939

93.714

0.609
  recA Helicobacter pylori strain NCTC11637

64.634

93.714

0.606
  recA Vibrio cholerae strain A1552

64.724

93.143

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.143

0.603
  recA Pseudomonas stutzeri DSM 10701

60.117

97.429

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.176

89.429

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.571

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.755

91.143

0.563
  recA Glaesserella parasuis strain SC1401

60.494

92.571

0.56

Multiple sequence alignment