Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JMUB898_RS07960 | Genome accession | NZ_AP018587 |
| Coordinates | 1670891..1671943 (-) | Length | 350 a.a. |
| NCBI ID | WP_037541417.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain JMUB898 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1672606..1750747 | 1670891..1671943 | flank | 663 |
Gene organization within MGE regions
Location: 1670891..1750747
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMUB898_RS07960 (JMUB898_1603) | recA | 1670891..1671943 (-) | 1053 | WP_037541417.1 | recombinase RecA | Machinery gene |
| JMUB898_RS07965 (JMUB898_1604) | - | 1672108..1673259 (-) | 1152 | WP_002442605.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| JMUB898_RS07970 (JMUB898_1605) | pgsA | 1673445..1674026 (-) | 582 | WP_002442602.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JMUB898_RS07975 (JMUB898_1606) | - | 1674058..1674450 (-) | 393 | WP_002442599.1 | RodZ family helix-turn-helix domain-containing protein | - |
| JMUB898_RS07980 (JMUB898_1607) | - | 1674469..1675296 (-) | 828 | WP_002442598.1 | YmfK family protein | - |
| JMUB898_RS07985 (JMUB898_1608) | ymfI | 1675481..1676185 (-) | 705 | WP_002442596.1 | elongation factor P 5-aminopentanone reductase | - |
| JMUB898_RS07990 (JMUB898_1609) | yfmH | 1676185..1677471 (-) | 1287 | WP_002442594.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| JMUB898_RS07995 (JMUB898_1610) | yfmF | 1677471..1678736 (-) | 1266 | WP_037541551.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| JMUB898_RS08000 (JMUB898_1611) | - | 1678783..1679493 (-) | 711 | WP_002442591.1 | GntR family transcriptional regulator | - |
| JMUB898_RS12875 | - | 1679496..1680947 (-) | 1452 | Protein_1538 | DNA translocase FtsK | - |
| JMUB898_RS12880 | - | 1681046..1681907 (-) | 862 | Protein_1539 | DNA translocase FtsK 4TM domain-containing protein | - |
| JMUB898_RS08010 (JMUB898_1613) | rnjB | 1682171..1683844 (-) | 1674 | WP_037541414.1 | ribonuclease J2 | - |
| JMUB898_RS08020 (JMUB898_1614) | pnp | 1684085..1686184 (-) | 2100 | WP_049402112.1 | polyribonucleotide nucleotidyltransferase | - |
| JMUB898_RS08025 (JMUB898_1615) | rpsO | 1686501..1686770 (-) | 270 | WP_002442583.1 | 30S ribosomal protein S15 | - |
| JMUB898_RS08030 (JMUB898_1616) | ribF | 1687031..1688002 (-) | 972 | WP_002442581.1 | riboflavin biosynthesis protein RibF | - |
| JMUB898_RS08035 (JMUB898_1617) | truB | 1688018..1688935 (-) | 918 | WP_002442577.1 | tRNA pseudouridine(55) synthase TruB | - |
| JMUB898_RS08040 (JMUB898_1618) | rbfA | 1689083..1689433 (-) | 351 | WP_037541413.1 | 30S ribosome-binding factor RbfA | - |
| JMUB898_RS08045 (JMUB898_1619) | infB | 1689595..1691760 (-) | 2166 | WP_126501971.1 | translation initiation factor IF-2 | - |
| JMUB898_RS08050 (JMUB898_1620) | - | 1691765..1692082 (-) | 318 | WP_002442572.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| JMUB898_RS08055 (JMUB898_1621) | rnpM | 1692079..1692363 (-) | 285 | WP_002442571.1 | RNase P modulator RnpM | - |
| JMUB898_RS08060 (JMUB898_1622) | nusA | 1692380..1693591 (-) | 1212 | WP_002442570.1 | transcription termination factor NusA | - |
| JMUB898_RS08065 (JMUB898_1623) | rimP | 1693612..1694079 (-) | 468 | WP_037541410.1 | ribosome maturation factor RimP | - |
| JMUB898_RS08070 (JMUB898_1624) | - | 1694261..1698571 (-) | 4311 | WP_095323372.1 | PolC-type DNA polymerase III | - |
| JMUB898_RS08075 (JMUB898_1625) | - | 1698824..1700527 (-) | 1704 | WP_002442566.1 | proline--tRNA ligase | - |
| JMUB898_RS08080 (JMUB898_1626) | rseP | 1700547..1701833 (-) | 1287 | WP_002442564.1 | RIP metalloprotease RseP | - |
| JMUB898_RS08085 (JMUB898_1627) | - | 1702074..1702856 (-) | 783 | WP_002442562.1 | phosphatidate cytidylyltransferase | - |
| JMUB898_RS08090 (JMUB898_1628) | - | 1702860..1703630 (-) | 771 | WP_037541408.1 | isoprenyl transferase | - |
| JMUB898_RS08095 (JMUB898_1629) | frr | 1703914..1704468 (-) | 555 | WP_002442559.1 | ribosome recycling factor | - |
| JMUB898_RS08100 (JMUB898_1630) | pyrH | 1704485..1705207 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| JMUB898_RS08105 (JMUB898_1631) | tsf | 1705345..1706223 (-) | 879 | WP_002442557.1 | translation elongation factor Ts | - |
| JMUB898_RS08110 (JMUB898_1632) | rpsB | 1706377..1707165 (-) | 789 | WP_002442555.1 | 30S ribosomal protein S2 | - |
| JMUB898_RS08115 (JMUB898_1633) | codY | 1707417..1708190 (-) | 774 | WP_037541406.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| JMUB898_RS08120 (JMUB898_1634) | hslU | 1708213..1709616 (-) | 1404 | WP_002442550.1 | ATP-dependent protease ATPase subunit HslU | - |
| JMUB898_RS08125 (JMUB898_1635) | hslV | 1709701..1710243 (-) | 543 | WP_002442548.1 | ATP-dependent protease subunit HslV | - |
| JMUB898_RS08130 (JMUB898_1636) | xerC | 1710247..1711137 (-) | 891 | WP_037541405.1 | tyrosine recombinase XerC | - |
| JMUB898_RS08135 (JMUB898_1637) | trmFO | 1711371..1712678 (-) | 1308 | WP_037541403.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| JMUB898_RS08140 (JMUB898_1638) | topA | 1712705..1714780 (-) | 2076 | WP_167495587.1 | type I DNA topoisomerase | - |
| JMUB898_RS08145 (JMUB898_1639) | dprA | 1714958..1715830 (-) | 873 | WP_037541402.1 | DNA-processing protein DprA | Machinery gene |
| JMUB898_RS08150 (JMUB898_1640) | sucD | 1716094..1717002 (-) | 909 | WP_002442537.1 | succinate--CoA ligase subunit alpha | - |
| JMUB898_RS08155 (JMUB898_1641) | sucC | 1717024..1718190 (-) | 1167 | WP_002442536.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JMUB898_RS08160 (JMUB898_1643) | - | 1718298..1719068 (-) | 771 | WP_002442534.1 | ribonuclease HII | - |
| JMUB898_RS08165 (JMUB898_1644) | ylqF | 1719052..1719936 (-) | 885 | WP_037541400.1 | ribosome biogenesis GTPase YlqF | - |
| JMUB898_RS08170 (JMUB898_1645) | - | 1720213..1722813 (+) | 2601 | WP_002442530.1 | YfhO family protein | - |
| JMUB898_RS08175 (JMUB898_1646) | - | 1722806..1725415 (+) | 2610 | WP_002442528.1 | YfhO family protein | - |
| JMUB898_RS08180 (JMUB898_1647) | rplS | 1725601..1725951 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| JMUB898_RS08185 (JMUB898_1648) | trmD | 1726056..1726793 (-) | 738 | WP_002442526.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| JMUB898_RS08190 (JMUB898_1649) | rimM | 1726793..1727296 (-) | 504 | WP_002442524.1 | ribosome maturation factor RimM | - |
| JMUB898_RS08195 (JMUB898_1650) | rpsP | 1727420..1727695 (-) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| JMUB898_RS08200 (JMUB898_1651) | ffh | 1727911..1729278 (-) | 1368 | WP_002442522.1 | signal recognition particle protein | - |
| JMUB898_RS08205 (JMUB898_1652) | - | 1729310..1729642 (-) | 333 | WP_002442519.1 | putative DNA-binding protein | - |
| JMUB898_RS08210 (JMUB898_1653) | ftsY | 1729629..1730885 (-) | 1257 | WP_126501973.1 | signal recognition particle-docking protein FtsY | - |
| JMUB898_RS08215 (JMUB898_1654) | smc | 1730882..1734451 (-) | 3570 | WP_044466284.1 | chromosome segregation protein SMC | - |
| JMUB898_RS08220 (JMUB898_1655) | rnc | 1734550..1735296 (-) | 747 | WP_002442511.1 | ribonuclease III | - |
| JMUB898_RS08225 (JMUB898_1656) | - | 1735416..1735649 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| JMUB898_RS08230 (JMUB898_1657) | fabG | 1735959..1736693 (-) | 735 | WP_037541397.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| JMUB898_RS08235 (JMUB898_1658) | fabD | 1736686..1737612 (-) | 927 | WP_037541396.1 | ACP S-malonyltransferase | - |
| JMUB898_RS08240 (JMUB898_1659) | plsX | 1737605..1738591 (-) | 987 | WP_037541395.1 | phosphate acyltransferase PlsX | - |
| JMUB898_RS08245 (JMUB898_1660) | fapR | 1738584..1739153 (-) | 570 | WP_044466285.1 | transcription factor FapR | - |
| JMUB898_RS08250 (JMUB898_1661) | recG | 1739376..1741424 (-) | 2049 | WP_002442500.1 | ATP-dependent DNA helicase RecG | - |
| JMUB898_RS12785 | - | 1741647..1741916 (-) | 270 | WP_232019016.1 | excalibur calcium-binding domain-containing protein | - |
| JMUB898_RS08255 (JMUB898_1662) | - | 1741896..1742501 (-) | 606 | Protein_1589 | thermonuclease family protein | - |
| JMUB898_RS08260 (JMUB898_1663) | - | 1742779..1743846 (-) | 1068 | WP_037541391.1 | Glu/Leu/Phe/Val dehydrogenase | - |
| JMUB898_RS08265 (JMUB898_1664) | fakA | 1744083..1745741 (-) | 1659 | WP_002442495.1 | fatty acid kinase catalytic subunit FakA | - |
| JMUB898_RS08270 (JMUB898_1665) | - | 1745756..1746130 (-) | 375 | WP_037541388.1 | Asp23/Gls24 family envelope stress response protein | - |
| JMUB898_RS08275 (JMUB898_1666) | rpmB | 1746509..1746697 (+) | 189 | WP_002435210.1 | 50S ribosomal protein L28 | - |
| JMUB898_RS08280 (JMUB898_1667) | - | 1746969..1747604 (-) | 636 | WP_002442491.1 | thiamine diphosphokinase | - |
| JMUB898_RS08285 (JMUB898_1668) | rpe | 1747609..1748253 (-) | 645 | WP_002442490.1 | ribulose-phosphate 3-epimerase | - |
| JMUB898_RS08290 (JMUB898_1669) | rsgA | 1748254..1749129 (-) | 876 | WP_002442489.1 | ribosome small subunit-dependent GTPase A | - |
| JMUB898_RS08295 (JMUB898_1670) | - | 1749305..1750492 (+) | 1188 | WP_002442488.1 | MFS transporter | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 38072.95 Da Isoelectric Point: 4.9352
>NTDB_id=70213 JMUB898_RS07960 WP_037541417.1 1670891..1671943(-) (recA) [Staphylococcus caprae strain JMUB898]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVEETESEEDTPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVEETESEEDTPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=70213 JMUB898_RS07960 WP_037541417.1 1670891..1671943(-) (recA) [Staphylococcus caprae strain JMUB898]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTCTCAAGCACATCAAGTGGTTCTGTCACAGTGGATAACGCACTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCA
GAAGTACAAAAAAATGGAGGCGTAGCAGCTTTCATTGATGCTGAACATGCGCTTGACCCTGTTTATGCTCAAGCATTAGG
TGTAGATATTGATAATCTATATTTATCTCAACCTGATCACGGTGAACAAGGTCTAGAAATTGCTGAAGCTTTTGTTCGAA
GCGGTGCCGTTGATATTGTAGTTGTCGATTCTGTAGCTGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTCGGCTTACAAGCAAGATTAATGTCTCAAGCGTTAAGAAAATTATCAGGTGCAATTTCTAAATCTAATACAAC
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGCGGTCGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTAAGAAGAGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCTTTCAGAGTGGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACTTAGGTGTCGAAAACGACATTGTAGATAAATCTGGTGCATGGTACTCATATAATG
GGGAAAGAATGGGCCAAGGTAAGGAAAATGTTAAAAACTACTTAAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAACTACGTGAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAAACTGAATCTGAAGAAGATACGCCTAAAACTTTATT
TGATGAAGAGTAA
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTCTCAAGCACATCAAGTGGTTCTGTCACAGTGGATAACGCACTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCA
GAAGTACAAAAAAATGGAGGCGTAGCAGCTTTCATTGATGCTGAACATGCGCTTGACCCTGTTTATGCTCAAGCATTAGG
TGTAGATATTGATAATCTATATTTATCTCAACCTGATCACGGTGAACAAGGTCTAGAAATTGCTGAAGCTTTTGTTCGAA
GCGGTGCCGTTGATATTGTAGTTGTCGATTCTGTAGCTGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTCGGCTTACAAGCAAGATTAATGTCTCAAGCGTTAAGAAAATTATCAGGTGCAATTTCTAAATCTAATACAAC
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGCGGTCGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTAAGAAGAGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCTTTCAGAGTGGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACTTAGGTGTCGAAAACGACATTGTAGATAAATCTGGTGCATGGTACTCATATAATG
GGGAAAGAATGGGCCAAGGTAAGGAAAATGTTAAAAACTACTTAAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAACTACGTGAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAAACTGAATCTGAAGAAGATACGCCTAAAACTTTATT
TGATGAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.