Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JMUB898_RS08145 Genome accession   NZ_AP018587
Coordinates   1714958..1715830 (-) Length   290 a.a.
NCBI ID   WP_037541402.1    Uniprot ID   -
Organism   Staphylococcus caprae strain JMUB898     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1709958..1720830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB898_RS08130 (JMUB898_1636) xerC 1710247..1711137 (-) 891 WP_037541405.1 tyrosine recombinase XerC -
  JMUB898_RS08135 (JMUB898_1637) trmFO 1711371..1712678 (-) 1308 WP_037541403.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JMUB898_RS08140 (JMUB898_1638) topA 1712705..1714780 (-) 2076 WP_167495587.1 type I DNA topoisomerase -
  JMUB898_RS08145 (JMUB898_1639) dprA 1714958..1715830 (-) 873 WP_037541402.1 DNA-processing protein DprA Machinery gene
  JMUB898_RS08150 (JMUB898_1640) sucD 1716094..1717002 (-) 909 WP_002442537.1 succinate--CoA ligase subunit alpha -
  JMUB898_RS08155 (JMUB898_1641) sucC 1717024..1718190 (-) 1167 WP_002442536.1 ADP-forming succinate--CoA ligase subunit beta -
  JMUB898_RS08160 (JMUB898_1643) - 1718298..1719068 (-) 771 WP_002442534.1 ribonuclease HII -
  JMUB898_RS08165 (JMUB898_1644) ylqF 1719052..1719936 (-) 885 WP_037541400.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33821.84 Da        Isoelectric Point: 8.8335

>NTDB_id=70215 JMUB898_RS08145 WP_037541402.1 1714958..1715830(-) (dprA) [Staphylococcus caprae strain JMUB898]
MIQHTLLKLYWANFTTTQVHQIIDFYPDFSLENEQTRMDIIKDWVLKQNSHALQRKLDQFKMLKTEYLYNYMKRIKLKYV
TYYDKDYPLLLKEIYHFPYVIFYKGTKQLFNQPHTLAVIGSRKSTSYTTQALEYLFPSFQQIQMTIISGLAYGADSVAHQ
VALKYHLPTIGVLGFGHDYHYPQSTYQLRDKIEKSGLVLSEYPPHSAISKYKFPERNRLISGLSRGLLITEAEEKSGSQI
TVDCALEQNRNVYVLPGSMFNQMTKGNLLRLEEGAQVVLDESSILTDYTF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=70215 JMUB898_RS08145 WP_037541402.1 1714958..1715830(-) (dprA) [Staphylococcus caprae strain JMUB898]
TTGATTCAACACACTTTATTAAAACTTTATTGGGCTAATTTCACTACAACGCAAGTACATCAAATCATTGATTTCTATCC
TGACTTTTCCTTGGAAAATGAACAAACAAGAATGGATATTATAAAAGATTGGGTATTAAAACAAAATTCCCACGCATTGC
AAAGAAAACTTGATCAATTTAAAATGCTAAAAACTGAGTATTTATACAACTATATGAAACGTATAAAACTAAAATATGTG
ACTTACTATGACAAAGATTATCCTTTACTTCTCAAAGAAATCTATCATTTTCCATACGTAATTTTTTATAAAGGAACCAA
ACAATTGTTTAATCAACCTCATACATTAGCTGTAATCGGCTCTCGTAAATCTACTTCATATACGACACAAGCTTTAGAGT
ATCTTTTTCCTTCATTTCAACAAATTCAAATGACTATAATTTCTGGTTTAGCATACGGCGCAGATAGTGTAGCGCATCAA
GTCGCTCTCAAATACCATTTACCCACCATAGGAGTTCTGGGATTCGGTCATGATTATCACTATCCTCAATCCACATATCA
ATTAAGAGATAAGATTGAAAAAAGTGGATTAGTATTAAGTGAATATCCTCCTCATTCAGCAATCAGTAAGTATAAATTTC
CAGAAAGAAATAGATTGATAAGTGGGCTTTCACGTGGCTTACTTATTACGGAAGCTGAAGAAAAAAGTGGCAGTCAAATT
ACTGTTGATTGTGCTTTAGAACAAAATCGAAATGTGTATGTGTTACCTGGATCCATGTTTAATCAAATGACAAAGGGAAA
TTTACTTAGATTAGAAGAAGGTGCTCAAGTCGTATTAGATGAAAGCAGCATTTTAACAGACTATACATTCTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

99.31

0.569
  dprA Staphylococcus aureus N315

57.292

99.31

0.569
  dprA Streptococcus mutans UA159

36.552

100

0.366

Multiple sequence alignment