Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | EL290_RS07960 | Genome accession | NZ_AP018585 |
| Coordinates | 1679909..1680961 (-) | Length | 350 a.a. |
| NCBI ID | WP_037541417.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain JMUB145 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1681624..1760000 | 1679909..1680961 | flank | 663 |
Gene organization within MGE regions
Location: 1679909..1760000
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL290_RS07960 (JMUB145_1609) | recA | 1679909..1680961 (-) | 1053 | WP_037541417.1 | recombinase RecA | Machinery gene |
| EL290_RS07965 (JMUB145_1610) | - | 1681126..1682277 (-) | 1152 | WP_002442605.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| EL290_RS07970 (JMUB145_1611) | pgsA | 1682463..1683044 (-) | 582 | WP_126493778.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| EL290_RS07975 (JMUB145_1612) | - | 1683076..1683468 (-) | 393 | WP_002442599.1 | helix-turn-helix domain-containing protein | - |
| EL290_RS07980 (JMUB145_1613) | - | 1683487..1684314 (-) | 828 | WP_002442598.1 | YmfK family protein | - |
| EL290_RS07985 (JMUB145_1614) | ymfI | 1684499..1685203 (-) | 705 | WP_002442596.1 | elongation factor P 5-aminopentanone reductase | - |
| EL290_RS07990 (JMUB145_1615) | yfmH | 1685203..1686489 (-) | 1287 | WP_002442594.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| EL290_RS07995 (JMUB145_1616) | yfmF | 1686489..1687754 (-) | 1266 | WP_037541551.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| EL290_RS08000 (JMUB145_1617) | - | 1687801..1688511 (-) | 711 | WP_002442591.1 | GntR family transcriptional regulator | - |
| EL290_RS12875 | - | 1688514..1689965 (-) | 1452 | Protein_1536 | DNA translocase FtsK | - |
| EL290_RS12880 | - | 1690064..1690925 (-) | 862 | Protein_1537 | DNA translocase FtsK 4TM domain-containing protein | - |
| EL290_RS08010 (JMUB145_1619) | rnjB | 1691190..1692863 (-) | 1674 | WP_037541414.1 | ribonuclease J2 | - |
| EL290_RS08020 (JMUB145_1620) | pnp | 1693104..1695203 (-) | 2100 | WP_049402112.1 | polyribonucleotide nucleotidyltransferase | - |
| EL290_RS08025 (JMUB145_1621) | rpsO | 1695520..1695789 (-) | 270 | WP_002442583.1 | 30S ribosomal protein S15 | - |
| EL290_RS08030 (JMUB145_1622) | ribF | 1696050..1697021 (-) | 972 | WP_002442581.1 | riboflavin biosynthesis protein RibF | - |
| EL290_RS08035 (JMUB145_1623) | truB | 1697037..1697954 (-) | 918 | WP_002442577.1 | tRNA pseudouridine(55) synthase TruB | - |
| EL290_RS08040 (JMUB145_1624) | rbfA | 1698102..1698452 (-) | 351 | WP_037541413.1 | 30S ribosome-binding factor RbfA | - |
| EL290_RS08045 (JMUB145_1625) | infB | 1698614..1700779 (-) | 2166 | WP_044466282.1 | translation initiation factor IF-2 | - |
| EL290_RS08050 (JMUB145_1626) | - | 1700784..1701101 (-) | 318 | WP_002442572.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| EL290_RS08055 (JMUB145_1627) | rnpM | 1701098..1701382 (-) | 285 | WP_002442571.1 | RNase P modulator RnpM | - |
| EL290_RS08060 (JMUB145_1628) | nusA | 1701399..1702610 (-) | 1212 | WP_002442570.1 | transcription termination factor NusA | - |
| EL290_RS08065 (JMUB145_1629) | rimP | 1702631..1703098 (-) | 468 | WP_037541410.1 | ribosome maturation factor RimP | - |
| EL290_RS08070 (JMUB145_1630) | - | 1703280..1707590 (-) | 4311 | WP_095323372.1 | PolC-type DNA polymerase III | - |
| EL290_RS08075 (JMUB145_1631) | - | 1707843..1709546 (-) | 1704 | WP_002442566.1 | proline--tRNA ligase | - |
| EL290_RS08080 (JMUB145_1632) | rseP | 1709566..1710852 (-) | 1287 | WP_002442564.1 | RIP metalloprotease RseP | - |
| EL290_RS08085 (JMUB145_1633) | - | 1711093..1711875 (-) | 783 | WP_002442562.1 | phosphatidate cytidylyltransferase | - |
| EL290_RS08090 (JMUB145_1634) | - | 1711879..1712649 (-) | 771 | WP_037541408.1 | isoprenyl transferase | - |
| EL290_RS08095 (JMUB145_1635) | frr | 1712933..1713487 (-) | 555 | WP_002442559.1 | ribosome recycling factor | - |
| EL290_RS08100 (JMUB145_1636) | pyrH | 1713504..1714226 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| EL290_RS08105 (JMUB145_1637) | tsf | 1714364..1715242 (-) | 879 | WP_002442557.1 | translation elongation factor Ts | - |
| EL290_RS08110 (JMUB145_1638) | rpsB | 1715396..1716184 (-) | 789 | WP_002442555.1 | 30S ribosomal protein S2 | - |
| EL290_RS08115 (JMUB145_1639) | codY | 1716436..1717209 (-) | 774 | WP_037541406.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| EL290_RS08120 (JMUB145_1640) | hslU | 1717232..1718635 (-) | 1404 | WP_002442550.1 | ATP-dependent protease ATPase subunit HslU | - |
| EL290_RS08125 (JMUB145_1641) | hslV | 1718720..1719262 (-) | 543 | WP_002442548.1 | ATP-dependent protease subunit HslV | - |
| EL290_RS08130 (JMUB145_1642) | xerC | 1719266..1720156 (-) | 891 | WP_037541405.1 | tyrosine recombinase XerC | - |
| EL290_RS08135 (JMUB145_1643) | trmFO | 1720390..1721697 (-) | 1308 | WP_037541403.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| EL290_RS08140 (JMUB145_1644) | topA | 1721724..1723799 (-) | 2076 | WP_167495587.1 | type I DNA topoisomerase | - |
| EL290_RS08145 (JMUB145_1645) | dprA | 1723977..1724849 (-) | 873 | WP_037541402.1 | DNA-processing protein DprA | Machinery gene |
| EL290_RS08150 (JMUB145_1646) | sucD | 1725113..1726021 (-) | 909 | WP_002442537.1 | succinate--CoA ligase subunit alpha | - |
| EL290_RS08155 (JMUB145_1647) | sucC | 1726043..1727209 (-) | 1167 | WP_002442536.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| EL290_RS08160 (JMUB145_1649) | - | 1727317..1728087 (-) | 771 | WP_002442534.1 | ribonuclease HII | - |
| EL290_RS08165 (JMUB145_1650) | ylqF | 1728071..1728955 (-) | 885 | WP_037541400.1 | ribosome biogenesis GTPase YlqF | - |
| EL290_RS08170 (JMUB145_1651) | - | 1729232..1731832 (+) | 2601 | WP_126493780.1 | YfhO family protein | - |
| EL290_RS08175 (JMUB145_1652) | - | 1731825..1734434 (+) | 2610 | WP_126493781.1 | YfhO family protein | - |
| EL290_RS08180 (JMUB145_1653) | rplS | 1734620..1734970 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| EL290_RS08185 (JMUB145_1654) | trmD | 1735075..1735812 (-) | 738 | WP_002442526.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EL290_RS08190 (JMUB145_1655) | rimM | 1735812..1736315 (-) | 504 | WP_002442524.1 | ribosome maturation factor RimM | - |
| EL290_RS08195 (JMUB145_1656) | rpsP | 1736439..1736714 (-) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| EL290_RS08200 (JMUB145_1657) | ffh | 1736930..1738297 (-) | 1368 | WP_126493782.1 | signal recognition particle protein | - |
| EL290_RS08205 (JMUB145_1658) | - | 1738329..1738661 (-) | 333 | WP_002442519.1 | putative DNA-binding protein | - |
| EL290_RS08210 (JMUB145_1659) | ftsY | 1738648..1739904 (-) | 1257 | WP_002442517.1 | signal recognition particle-docking protein FtsY | - |
| EL290_RS08215 (JMUB145_1660) | smc | 1739901..1743470 (-) | 3570 | WP_044466284.1 | chromosome segregation protein SMC | - |
| EL290_RS08220 (JMUB145_1661) | rnc | 1743569..1744315 (-) | 747 | WP_002442511.1 | ribonuclease III | - |
| EL290_RS08225 (JMUB145_1662) | - | 1744435..1744668 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| EL290_RS08230 (JMUB145_1663) | fabG | 1745093..1745827 (-) | 735 | WP_037541397.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| EL290_RS08235 (JMUB145_1664) | fabD | 1745820..1746746 (-) | 927 | WP_037541396.1 | ACP S-malonyltransferase | - |
| EL290_RS08240 (JMUB145_1665) | plsX | 1746739..1747725 (-) | 987 | WP_037541395.1 | phosphate acyltransferase PlsX | - |
| EL290_RS08245 (JMUB145_1666) | fapR | 1747718..1748287 (-) | 570 | WP_044466285.1 | transcription factor FapR | - |
| EL290_RS08250 (JMUB145_1667) | recG | 1748630..1750678 (-) | 2049 | WP_002442500.1 | ATP-dependent DNA helicase RecG | - |
| EL290_RS12805 | - | 1750901..1751170 (-) | 270 | WP_232019016.1 | excalibur calcium-binding domain-containing protein | - |
| EL290_RS08255 (JMUB145_1668) | - | 1751150..1751755 (-) | 606 | Protein_1587 | thermonuclease family protein | - |
| EL290_RS08260 (JMUB145_1669) | - | 1752032..1753099 (-) | 1068 | WP_037541391.1 | Leu/Phe/Val dehydrogenase | - |
| EL290_RS08265 (JMUB145_1670) | fakA | 1753336..1754994 (-) | 1659 | WP_126493783.1 | fatty acid kinase catalytic subunit FakA | - |
| EL290_RS08270 (JMUB145_1671) | - | 1755009..1755383 (-) | 375 | WP_037541388.1 | Asp23/Gls24 family envelope stress response protein | - |
| EL290_RS08275 (JMUB145_1672) | rpmB | 1755762..1755950 (+) | 189 | WP_002435210.1 | 50S ribosomal protein L28 | - |
| EL290_RS08280 (JMUB145_1673) | - | 1756222..1756857 (-) | 636 | WP_002442491.1 | thiamine diphosphokinase | - |
| EL290_RS08285 (JMUB145_1674) | rpe | 1756862..1757506 (-) | 645 | WP_002442490.1 | ribulose-phosphate 3-epimerase | - |
| EL290_RS08290 (JMUB145_1675) | rsgA | 1757507..1758382 (-) | 876 | WP_002442489.1 | ribosome small subunit-dependent GTPase A | - |
| EL290_RS08295 (JMUB145_1676) | - | 1758558..1759745 (+) | 1188 | WP_002442488.1 | CynX/NimT family MFS transporter | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 38072.95 Da Isoelectric Point: 4.9352
>NTDB_id=70141 EL290_RS07960 WP_037541417.1 1679909..1680961(-) (recA) [Staphylococcus caprae strain JMUB145]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVEETESEEDTPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVEETESEEDTPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=70141 EL290_RS07960 WP_037541417.1 1679909..1680961(-) (recA) [Staphylococcus caprae strain JMUB145]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTCTCAAGCACATCAAGTGGTTCTGTCACAGTGGATAACGCACTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCA
GAAGTACAAAAAAATGGAGGCGTAGCAGCTTTCATTGATGCTGAACATGCGCTTGACCCTGTTTATGCTCAAGCATTAGG
TGTAGATATTGATAATCTATATTTATCTCAACCTGATCACGGTGAACAAGGTCTAGAAATTGCTGAAGCTTTTGTTCGAA
GCGGTGCCGTTGATATTGTAGTTGTCGATTCTGTAGCTGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTCGGCTTACAAGCAAGATTAATGTCTCAAGCGTTAAGAAAATTATCAGGTGCAATTTCTAAATCTAATACAAC
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGCGGTCGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTAAGAAGAGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCTTTCAGAGTGGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACTTAGGTGTCGAAAACGACATTGTAGATAAATCTGGTGCATGGTACTCATATAATG
GGGAAAGAATGGGCCAAGGTAAGGAAAATGTTAAAAACTACTTAAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAACTACGTGAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAAACTGAATCTGAAGAAGATACGCCTAAAACTTTATT
TGATGAAGAGTAA
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTAATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTCTCAAGCACATCAAGTGGTTCTGTCACAGTGGATAACGCACTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGACCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCA
GAAGTACAAAAAAATGGAGGCGTAGCAGCTTTCATTGATGCTGAACATGCGCTTGACCCTGTTTATGCTCAAGCATTAGG
TGTAGATATTGATAATCTATATTTATCTCAACCTGATCACGGTGAACAAGGTCTAGAAATTGCTGAAGCTTTTGTTCGAA
GCGGTGCCGTTGATATTGTAGTTGTCGATTCTGTAGCTGCCTTAACACCGAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCATGTCGGCTTACAAGCAAGATTAATGTCTCAAGCGTTAAGAAAATTATCAGGTGCAATTTCTAAATCTAATACAAC
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGTGTTATGTTCGGTAACCCTGAAACAACACCAGGCGGTCGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTAAGAAGAGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCACCACCTTTCAGAGTGGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGAGAATTAATTGACTTAGGTGTCGAAAACGACATTGTAGATAAATCTGGTGCATGGTACTCATATAATG
GGGAAAGAATGGGCCAAGGTAAGGAAAATGTTAAAAACTACTTAAAAGAAAATCCTCAAATTAAAGAAGAAATTGATCGC
AAACTACGTGAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAAACTGAATCTGAAGAAGATACGCCTAAAACTTTATT
TGATGAAGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.