Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NGP02_RS04435 Genome accession   NZ_CP099551
Coordinates   996469..997605 (-) Length   378 a.a.
NCBI ID   WP_050339350.1    Uniprot ID   F6IWH0
Organism   Lactiplantibacillus pentosus strain KW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 991469..1002605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGP02_RS04425 (NGP02_04435) - 993749..994555 (-) 807 WP_252701757.1 TIGR00282 family metallophosphoesterase -
  NGP02_RS04430 (NGP02_04440) rny 994679..996238 (-) 1560 WP_050339349.1 ribonuclease Y -
  NGP02_RS04435 (NGP02_04445) recA 996469..997605 (-) 1137 WP_050339350.1 recombinase RecA Machinery gene
  NGP02_RS04440 (NGP02_04450) cinA 997697..998959 (-) 1263 WP_050339352.1 competence/damage-inducible protein A Machinery gene
  NGP02_RS04445 (NGP02_04455) pgsA 999423..1000007 (-) 585 WP_003639171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NGP02_RS04450 (NGP02_04460) - 1000030..1000902 (-) 873 WP_050339353.1 RodZ domain-containing protein -
  NGP02_RS04455 (NGP02_04465) yfmH 1001006..1002307 (-) 1302 WP_050339354.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40690.02 Da        Isoelectric Point: 5.3853

>NTDB_id=700665 NGP02_RS04435 WP_050339350.1 996469..997605(-) (recA) [Lactiplantibacillus pentosus strain KW1]
MADARKAALDTALKKIEKNFGKGAIMRMGDAAQTTISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKEGTNIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGISQTGEIVDMAAEKDIVKKSGSWYSYGDDRIGQGRENAKKYLDEHPDVMAEIRQ
KVRDAYGMDQTGEEDDQADDKSKDKATKPSDKSQAQAKPKKPVATETSLDLDDSKTDK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=700665 NGP02_RS04435 WP_050339350.1 996469..997605(-) (recA) [Lactiplantibacillus pentosus strain KW1]
TTGGCTGATGCACGGAAAGCAGCACTAGATACTGCCCTAAAAAAGATCGAAAAGAACTTTGGTAAAGGGGCGATTATGCG
GATGGGTGACGCTGCCCAGACGACCATTTCAACAATTTCCAGCGGGTCACTAGCCTTAGATGACGCATTAGGCGTTGGTG
GTTACCCACGTGGCCGAATCGTTGAAATTTATGGCCCTGAAAGTTCCGGTAAAACGACCGTTGCACTACACGCGGTCGCT
GAAGTTCAAAAGCAAGGCGGGACGGCCGCCTATATCGATGCTGAAAACGCCTTGGATCCGGTTTACGCGGAACATTTAGG
TGTCAACATTGATGATTTGTTACTTTCACAACCAGATACTGGTGAACAAGGTCTTGAAATCGCGGATGCTTTAGTTTCCA
GTGGCGCGGTTGATATCTTAGTTGTCGATTCAGTTGCGGCGTTAGTACCACGGGCCGAAATTGAAGGTGAAATGGGTGAC
GCCCACGTTGGGTTACAAGCCCGGTTAATGTCACAAGCGTTGCGGAAGTTATCCGGGACTTTGAACAAGACAAAGACCAT
CGCACTATTTATTAACCAAATTCGTGAAAAAGTTGGCGTGATGTTTGGAAACCCTGAAACGACCCCTGGTGGTCGGGCTC
TGAAGTTCTATGCGACGATTCGACTTGAAGTTCGTCGTGCTGAACAAATCAAGGAAGGAACCAACATCATTGGGAACCGT
GTTCGGATCAAAGTTGTGAAGAACAAGGTTGCGCCGCCATTTAAGCGGGCCGAAGTTGATATCATGTACGGTCAAGGAAT
CTCACAAACCGGTGAAATTGTTGATATGGCCGCTGAAAAGGATATTGTTAAGAAGAGTGGTTCATGGTATTCATACGGTG
ATGACCGGATTGGTCAAGGTCGTGAGAATGCGAAGAAGTACTTGGATGAACATCCAGATGTCATGGCTGAGATTCGTCAA
AAAGTCCGGGATGCATACGGCATGGACCAGACGGGTGAAGAAGACGACCAAGCTGATGACAAGTCCAAGGATAAGGCAAC
TAAACCTAGTGACAAGTCACAGGCACAAGCCAAGCCTAAAAAGCCAGTTGCAACTGAAACATCTTTAGATCTTGATGATT
CAAAAACCGATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6IWH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

85.886

88.095

0.757
  recA Bacillus subtilis subsp. subtilis str. 168

74.699

87.831

0.656
  recA Streptococcus pneumoniae D39

64.171

98.942

0.635
  recA Streptococcus pneumoniae TIGR4

64.171

98.942

0.635
  recA Streptococcus pneumoniae R6

64.171

98.942

0.635
  recA Streptococcus pneumoniae Rx1

64.171

98.942

0.635
  recA Streptococcus mutans UA159

65.73

94.18

0.619
  recA Streptococcus pyogenes NZ131

69.277

87.831

0.608
  recA Streptococcus mitis SK321

69.605

87.037

0.606
  recA Streptococcus mitis NCTC 12261

68.997

87.037

0.601
  recA Lactococcus lactis subsp. cremoris KW2

69.207

86.772

0.601
  recA Ralstonia pseudosolanacearum GMI1000

61.584

90.212

0.556
  recA Vibrio cholerae strain A1552

59.884

91.005

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.884

91.005

0.545
  recA Neisseria gonorrhoeae MS11

61.515

87.302

0.537
  recA Neisseria gonorrhoeae MS11

61.515

87.302

0.537
  recA Neisseria gonorrhoeae strain FA1090

61.515

87.302

0.537
  recA Pseudomonas stutzeri DSM 10701

62.539

85.45

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

85.979

0.534
  recA Acinetobacter baylyi ADP1

58.601

90.741

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.017

90.741

0.526
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.061

86.772

0.521
  recA Acinetobacter baumannii D1279779

59.877

85.714

0.513
  recA Glaesserella parasuis strain SC1401

60.248

85.185

0.513
  recA Helicobacter pylori 26695

58.41

86.508

0.505
  recA Helicobacter pylori strain NCTC11637

58.41

86.508

0.505