Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP45_RS14315 Genome accession   NZ_CP115270
Coordinates   3018652..3019677 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain F019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3013652..3024677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS14290 (PCP45_14295) - 3013841..3014158 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  PCP45_RS14295 (PCP45_14300) trkA 3014307..3015680 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  PCP45_RS14300 (PCP45_14305) rsmB 3015707..3017011 (-) 1305 WP_171892711.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP45_RS14305 (PCP45_14310) fmt 3017008..3017952 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PCP45_RS14310 (PCP45_14315) def 3018007..3018513 (-) 507 WP_003097293.1 peptide deformylase -
  PCP45_RS14315 (PCP45_14320) tsaP 3018652..3019677 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP45_RS14320 (PCP45_14325) dprA 3019812..3020900 (+) 1089 WP_023092225.1 DNA-processing protein DprA Machinery gene
  PCP45_RS14325 (PCP45_14330) - 3020941..3021498 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP45_RS14330 (PCP45_14335) - 3021508..3022485 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PCP45_RS14335 (PCP45_14340) hemF 3022676..3023593 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP45_RS14340 (PCP45_14345) aroE 3023651..3024475 (+) 825 WP_023098288.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=700666 PCP45_RS14315 WP_003097294.1 3018652..3019677(+) (tsaP) [Pseudomonas aeruginosa strain F019]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=700666 PCP45_RS14315 WP_003097294.1 3018652..3019677(+) (tsaP) [Pseudomonas aeruginosa strain F019]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393