Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NGP02_RS04440 Genome accession   NZ_CP099551
Coordinates   997697..998959 (-) Length   420 a.a.
NCBI ID   WP_050339352.1    Uniprot ID   F6IWH1
Organism   Lactiplantibacillus pentosus strain KW1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 992697..1003959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGP02_RS04425 (NGP02_04435) - 993749..994555 (-) 807 WP_252701757.1 TIGR00282 family metallophosphoesterase -
  NGP02_RS04430 (NGP02_04440) rny 994679..996238 (-) 1560 WP_050339349.1 ribonuclease Y -
  NGP02_RS04435 (NGP02_04445) recA 996469..997605 (-) 1137 WP_050339350.1 recombinase RecA Machinery gene
  NGP02_RS04440 (NGP02_04450) cinA 997697..998959 (-) 1263 WP_050339352.1 competence/damage-inducible protein A Machinery gene
  NGP02_RS04445 (NGP02_04455) pgsA 999423..1000007 (-) 585 WP_003639171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NGP02_RS04450 (NGP02_04460) - 1000030..1000902 (-) 873 WP_050339353.1 RodZ domain-containing protein -
  NGP02_RS04455 (NGP02_04465) yfmH 1001006..1002307 (-) 1302 WP_050339354.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NGP02_RS04460 (NGP02_04470) yfmF 1002304..1003569 (-) 1266 WP_152705920.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45006.02 Da        Isoelectric Point: 5.4041

>NTDB_id=700666 NGP02_RS04440 WP_050339352.1 997697..998959(-) (cinA) [Lactiplantibacillus pentosus strain KW1]
MQAEIIAVGTEILLGQITNTNSTHIARGLAELGIDSYYQTVVGDNPQRLSAVIEIAAQRNDLVILTGGLGPTADDLTKQT
LAHYLNVPLVEDAAAMQKITDWFAKNEQVMTANNRQQALYPQGAQPLVNHNGMAVGAFYQSSDSADFLLLPGPPRELAVM
FDREAKPKLAAAYGDQAQIYSRVMRFYGITESALATKLQPLIDNQTAVTIAPYAKTNEVTLRLSAQAKTESAAKAAIDQV
DQQIKALIGRYFYGYGDDNSLVNVVVKQLIDANLSITAAESLTAGLFQSTLGSVSGVSAVFPGGFVTYANEVKHQLVNVP
QDIIDTDGVVSEATAKAMALGAQQQLQTDVAVSFTGVAGPDKLEGQPAGTVWIGLAYRQQAPIAQQFHFAGGRQRIRQRS
VMAGLDLLRHALSSDSTLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=700666 NGP02_RS04440 WP_050339352.1 997697..998959(-) (cinA) [Lactiplantibacillus pentosus strain KW1]
ATGCAGGCAGAGATAATCGCGGTCGGCACCGAGATTTTATTAGGACAAATCACGAATACGAACAGTACGCACATTGCACG
TGGACTGGCTGAGTTAGGCATTGACAGTTACTATCAGACGGTGGTGGGTGATAATCCGCAACGGCTGTCAGCGGTAATTG
AAATTGCGGCGCAACGTAATGATTTAGTGATTTTAACGGGTGGTCTCGGACCGACTGCGGATGATTTAACGAAGCAGACA
TTGGCACATTATTTAAATGTACCGTTAGTCGAAGATGCAGCAGCAATGCAAAAAATCACCGACTGGTTTGCAAAAAATGA
ACAGGTCATGACCGCTAACAACCGGCAACAGGCACTGTATCCGCAAGGCGCTCAGCCGTTAGTCAATCATAACGGCATGG
CGGTCGGTGCGTTTTATCAATCGTCTGACAGTGCGGATTTCTTATTGTTGCCAGGACCACCACGTGAGTTAGCGGTGATG
TTTGACCGGGAAGCTAAGCCGAAGCTGGCAGCAGCTTATGGCGACCAGGCTCAGATTTATTCGCGGGTGATGCGGTTTTA
CGGGATAACCGAATCGGCACTTGCGACCAAGTTACAACCGCTAATTGACAATCAGACGGCGGTGACGATTGCACCGTATG
CTAAGACGAATGAAGTGACCTTACGTTTGAGTGCCCAGGCTAAGACTGAGTCGGCTGCCAAAGCGGCGATCGACCAAGTT
GACCAACAGATCAAAGCGTTGATTGGACGCTATTTCTATGGCTACGGTGATGATAATTCATTGGTCAACGTGGTGGTAAA
ACAGCTGATTGATGCTAACTTGAGCATTACGGCCGCCGAAAGCTTAACCGCTGGCCTGTTTCAGAGTACCCTTGGGAGCG
TGTCAGGTGTTTCGGCAGTTTTTCCAGGTGGCTTTGTGACGTATGCAAATGAAGTTAAGCATCAGCTGGTTAATGTGCCT
CAAGACATCATTGATACCGATGGGGTAGTGTCCGAGGCCACCGCTAAAGCCATGGCTTTAGGCGCACAACAGCAGCTACA
GACGGACGTTGCCGTCAGTTTCACCGGTGTTGCAGGTCCCGATAAGCTAGAAGGGCAACCGGCTGGCACGGTTTGGATTG
GCTTAGCTTATCGGCAGCAAGCACCAATTGCCCAGCAATTCCACTTTGCTGGGGGACGACAACGTATTCGTCAGCGCAGC
GTGATGGCCGGATTAGACCTATTACGGCATGCATTGTCGTCGGATTCGACACTGAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6IWH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.533

100

0.505
  cinA Streptococcus mitis NCTC 12261

49.065

100

0.5
  cinA Streptococcus pneumoniae Rx1

49.176

100

0.498
  cinA Streptococcus pneumoniae TIGR4

49.176

100

0.498
  cinA Streptococcus pneumoniae R6

49.176

100

0.498
  cinA Streptococcus pneumoniae D39

48.941

100

0.495
  cinA Streptococcus mutans UA159

48.227

100

0.486
  cinA Bacillus subtilis subsp. subtilis str. 168

45.946

96.905

0.445
  cinA Streptococcus suis isolate S10

40.528

99.286

0.402