Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NDR85_RS09445 Genome accession   NZ_CP098738
Coordinates   1857838..1858884 (+) Length   348 a.a.
NCBI ID   WP_010334307.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852838..1863884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS09420 (NDR85_09400) - 1853642..1853899 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  NDR85_RS09425 (NDR85_09405) - 1854029..1854820 (+) 792 WP_024121452.1 YmfK family protein -
  NDR85_RS09430 (NDR85_09410) - 1854887..1855765 (+) 879 WP_263870997.1 RodZ family helix-turn-helix domain-containing protein -
  NDR85_RS09435 (NDR85_09415) pgsA 1855815..1856396 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NDR85_RS09440 (NDR85_09420) cinA 1856415..1857665 (+) 1251 WP_044155839.1 competence/damage-inducible protein A Machinery gene
  NDR85_RS09445 (NDR85_09425) recA 1857838..1858884 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  NDR85_RS09450 (NDR85_09430) - 1859063..1860241 (+) 1179 WP_044155837.1 serine hydrolase -
  NDR85_RS09455 (NDR85_09435) rny 1860528..1862090 (+) 1563 WP_010334309.1 ribonuclease Y -
  NDR85_RS09460 (NDR85_09440) ymdB 1862152..1862946 (+) 795 WP_003245138.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  NDR85_RS09465 (NDR85_09445) spoVS 1863146..1863406 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38087.22 Da        Isoelectric Point: 4.7315

>NTDB_id=697547 NDR85_RS09445 WP_010334307.1 1857838..1858884(+) (recA) [Bacillus halotolerans strain XE48]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=697547 NDR85_RS09445 WP_010334307.1 1857838..1858884(+) (recA) [Bacillus halotolerans strain XE48]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAGCAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACGGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTTGCGCTCCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCGTTTATCGATGCGGAGCACGCGCTAGACCCGGTATACGCACAAAAACTCGGTGT
CAATATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCAGAAGCGTTGGTTCGAAGCG
GTGCGGTTGACATCGTTGTTGTCGACTCTGTAGCGGCGCTCGTTCCGAAAGCTGAAATTGAAGGCGACATGGGAGATTCA
CATGTCGGTTTGCAGGCACGTTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCTATCAACAAATCGAAAACAATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGAAACCCGGAAACGACTCCCGGCGGTCGTGCGCTGA
AATTCTACTCTTCCGTTCGTCTTGAAGTACGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTTATGGGGAATAAAACG
AGAATTAAAGTTGTGAAAAACAAGGTGGCTCCTCCGTTCCGTACAGCTGAGGTTGATATTATGTATGGAGAAGGTATCTC
AAAAGAAGGCGAAATCATTGATCTCGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCCAAACAATTCTTAAAAGAAAATAAAGATATCATGCTGATGATTCAGGAGCAA
ATTCGTGAACATTACGGCTTAGATAATAACGGAGTAGTACAGCAGCAGGCGGAAGAGACACAGGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.713

100

0.997
  recA Latilactobacillus sakei subsp. sakei 23K

75.229

93.966

0.707
  recA Streptococcus pneumoniae R6

66.193

100

0.67
  recA Streptococcus pneumoniae TIGR4

66.193

100

0.67
  recA Streptococcus pneumoniae D39

66.193

100

0.67
  recA Streptococcus pneumoniae Rx1

66.193

100

0.67
  recA Streptococcus mutans UA159

65.805

100

0.658
  recA Streptococcus mitis SK321

65.706

99.713

0.655
  recA Streptococcus mitis NCTC 12261

68.485

94.828

0.649
  recA Neisseria gonorrhoeae MS11

63.873

99.425

0.635
  recA Neisseria gonorrhoeae MS11

63.873

99.425

0.635
  recA Neisseria gonorrhoeae strain FA1090

63.873

99.425

0.635
  recA Streptococcus pyogenes NZ131

67.378

94.253

0.635
  recA Lactococcus lactis subsp. cremoris KW2

65.455

94.828

0.621
  recA Helicobacter pylori 26695

62.791

98.851

0.621
  recA Helicobacter pylori strain NCTC11637

62.791

98.851

0.621
  recA Ralstonia pseudosolanacearum GMI1000

64.438

94.54

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

98.276

0.606
  recA Vibrio cholerae strain A1552

60.756

98.851

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.756

98.851

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Glaesserella parasuis strain SC1401

60.29

99.138

0.598
  recA Acinetobacter baumannii D1279779

60.947

97.126

0.592
  recA Pseudomonas stutzeri DSM 10701

63.125

91.954

0.58
  recA Acinetobacter baylyi ADP1

62.112

92.529

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

92.816

0.56