Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NDR85_RS09440 Genome accession   NZ_CP098738
Coordinates   1856415..1857665 (+) Length   416 a.a.
NCBI ID   WP_044155839.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XE48     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1851415..1862665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR85_RS09410 (NDR85_09390) yfmH 1851495..1852781 (+) 1287 WP_044155844.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NDR85_RS09415 (NDR85_09395) ymfI 1852834..1853562 (+) 729 WP_044155843.1 elongation factor P 5-aminopentanone reductase -
  NDR85_RS09420 (NDR85_09400) - 1853642..1853899 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  NDR85_RS09425 (NDR85_09405) - 1854029..1854820 (+) 792 WP_024121452.1 YmfK family protein -
  NDR85_RS09430 (NDR85_09410) - 1854887..1855765 (+) 879 WP_263870997.1 RodZ family helix-turn-helix domain-containing protein -
  NDR85_RS09435 (NDR85_09415) pgsA 1855815..1856396 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NDR85_RS09440 (NDR85_09420) cinA 1856415..1857665 (+) 1251 WP_044155839.1 competence/damage-inducible protein A Machinery gene
  NDR85_RS09445 (NDR85_09425) recA 1857838..1858884 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  NDR85_RS09450 (NDR85_09430) - 1859063..1860241 (+) 1179 WP_044155837.1 serine hydrolase -
  NDR85_RS09455 (NDR85_09435) rny 1860528..1862090 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45428.67 Da        Isoelectric Point: 5.0594

>NTDB_id=697546 NDR85_RS09440 WP_044155839.1 1856415..1857665(+) (cinA) [Bacillus halotolerans strain XE48]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIVFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=697546 NDR85_RS09440 WP_044155839.1 1856415..1857665(+) (cinA) [Bacillus halotolerans strain XE48]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTTGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGTATTGCTGAAGAGCGCTCTGATTTTATTGTTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCAAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCACCGGGAATGCTTACAGAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCGAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAGTCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCGTTGGCAGCGGACGGAGAGGTGACGCTTCGCCTGACAGCAAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGAGCAGTCAGCGAGGAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTAT
TTATCGGTATTTCTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

96.154

100

0.962
  cinA Streptococcus mutans UA159

47.215

99.279

0.469
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus mitis NCTC 12261

46.411

100

0.466
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.462
  cinA Streptococcus pneumoniae R6

45.933

100

0.462
  cinA Streptococcus pneumoniae D39

45.694

100

0.459
  cinA Streptococcus suis isolate S10

41.432

93.99

0.389