Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NAF16_RS11955 Genome accession   NZ_CP098021
Coordinates   2537841..2538893 (-) Length   350 a.a.
NCBI ID   WP_020330433.1    Uniprot ID   S7JHV1
Organism   Vibrio fluvialis strain V13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2532841..2543893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS11935 (NAF16_11910) csrA 2532859..2533056 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  NAF16_RS11940 (NAF16_11915) - 2533149..2534336 (-) 1188 WP_020330436.1 aspartate kinase -
  NAF16_RS11945 (NAF16_11920) alaS 2534543..2537125 (-) 2583 WP_323694792.1 alanine--tRNA ligase -
  NAF16_RS11950 (NAF16_11925) recX 2537313..2537771 (-) 459 WP_055452611.1 recombination regulator RecX -
  NAF16_RS11955 (NAF16_11930) recA 2537841..2538893 (-) 1053 WP_020330433.1 recombinase RecA Machinery gene
  NAF16_RS11960 (NAF16_11935) pncC 2539066..2539554 (-) 489 WP_323694793.1 nicotinamide-nucleotide amidase -
  NAF16_RS11965 (NAF16_11940) mutS 2539639..2542200 (+) 2562 WP_323694794.1 DNA mismatch repair protein MutS -
  NAF16_RS11970 (NAF16_11945) rpoS 2542269..2543255 (-) 987 WP_020429689.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38105.59 Da        Isoelectric Point: 4.9925

>NTDB_id=693558 NAF16_RS11955 WP_020330433.1 2537841..2538893(-) (recA) [Vibrio fluvialis strain V13]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIS
AAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGKANACKYLRENPEVAKFIDS
KLREMLLNPEQVAVNEEPEFGSVPEQEEEF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=693558 NAF16_RS11955 WP_020330433.1 2537841..2538893(-) (recA) [Vibrio fluvialis strain V13]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCAGCCCTGGGTCAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGCG
CTTGGGTGACAACCGCACGATGGACGTAGAAACGATTTCTACCGGTTCACTTTCTCTGGATATCGCCTTGGGTGCGGGTG
GCCTGCCAATGGGTCGTATCGTGGAAATCTACGGTCCGGAATCATCAGGTAAAACGACGCTGACTCTGGAACTGATCTCA
GCGGCTCAGCGCGAAGGTAAAACATGTGCCTTCATCGATGCAGAGCACGCTCTGGATCCAGTTTATGCTCGTCGTCTGGG
CGTGAAAATTGATGAACTGCTGGTGTCTCAGCCAGATACAGGTGAACAGGCGCTGGAAATCTGTGATGCATTGGCGCGTT
CAGGTGCTGTTGACGTTATCGTCGTTGACTCGGTTGCAGCACTTACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTGCAAGCGCGTATGCTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTGAAACAGTCAAACTGTAT
GTGCATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACCACTACTGGTGGTAACGCAC
TGAAATTCTATGCATCTGTTCGTCTGGATATTCGTCGTACCGGTTCTATCAAAGAAGGCGATGAAGTTGTCGGTAACGAA
ACTCGTATCAAAGTAGTGAAGAACAAGATTGCGGCACCATTTAAAGAAGCCAACACGCAAATCATGTACGGCCAAGGCTT
TAACCGTGAAGGTGAGCTGATTGAACTGGGCGTGAAGCACAAGCTGGTAGAAAAGGCAGGTGCTTGGTACAGCTACAACG
GCGACAAAATTGGTCAAGGTAAAGCGAACGCGTGCAAATACTTGAGAGAAAATCCTGAAGTGGCTAAATTCATCGACAGC
AAACTGCGTGAAATGCTGCTGAACCCTGAACAAGTTGCGGTAAACGAAGAGCCGGAATTTGGTTCAGTGCCAGAACAAGA
AGAAGAGTTTTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

90.652

100

0.914
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.652

100

0.914
  recA Acinetobacter baumannii D1279779

71.304

98.571

0.703
  recA Acinetobacter baylyi ADP1

71.848

97.429

0.7
  recA Pseudomonas stutzeri DSM 10701

74.924

93.429

0.7
  recA Glaesserella parasuis strain SC1401

71.601

94.571

0.677
  recA Neisseria gonorrhoeae MS11

68.712

93.143

0.64
  recA Neisseria gonorrhoeae MS11

68.712

93.143

0.64
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.143

0.64
  recA Ralstonia pseudosolanacearum GMI1000

72.026

88.857

0.64
  recA Streptococcus mitis SK321

59.829

100

0.6
  recA Streptococcus mitis NCTC 12261

59.544

100

0.597
  recA Streptococcus pneumoniae R6

59.714

100

0.597
  recA Streptococcus pneumoniae TIGR4

59.714

100

0.597
  recA Streptococcus pneumoniae Rx1

59.714

100

0.597
  recA Streptococcus pneumoniae D39

59.714

100

0.597
  recA Helicobacter pylori 26695

59.706

97.143

0.58
  recA Helicobacter pylori strain NCTC11637

59.412

97.143

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

91.143

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.714

0.571
  recA Streptococcus mutans UA159

61.538

92.857

0.571
  recA Streptococcus pyogenes NZ131

61.231

92.857

0.569
  recA Lactococcus lactis subsp. cremoris KW2

59.403

95.714

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

94.857

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.714

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

91.714

0.551