Detailed information NTG0693560

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NAF16_RS11970
• Genome accession: NZ_CP098021
• Coordinates: 2542269..2543255 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain V13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2537269..2548255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAF16_RS11950 (NAF16_11925)	recX	2537313..2537771 (-)	459	WP_055452611.1	recombination regulator RecX	-
NAF16_RS11955 (NAF16_11930)	recA	2537841..2538893 (-)	1053	WP_020330433.1	recombinase RecA	Machinery gene
NAF16_RS11960 (NAF16_11935)	pncC	2539066..2539554 (-)	489	WP_323694793.1	nicotinamide-nucleotide amidase	-
NAF16_RS11965 (NAF16_11940)	mutS	2539639..2542200 (+)	2562	WP_323694794.1	DNA mismatch repair protein MutS	-
NAF16_RS11970 (NAF16_11945)	rpoS	2542269..2543255 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
NAF16_RS11975 (NAF16_11950)	nlpD	2543327..2544262 (-)	936	WP_323694795.1	murein hydrolase activator NlpD	-
NAF16_RS11980 (NAF16_11955)	-	2544262..2544888 (-)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NAF16_RS11985 (NAF16_11960)	surE	2544881..2545648 (-)	768	WP_323694796.1	5'/3'-nucleotidase SurE	-
NAF16_RS11990 (NAF16_11965)	truD	2545641..2546687 (-)	1047	WP_323694797.1	tRNA pseudouridine(13) synthase TruD	-
NAF16_RS11995 (NAF16_11970)	ispF	2546719..2547195 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NAF16_RS12000 (NAF16_11975)	ispD	2547198..2547908 (-)	711	WP_323694798.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NAF16_RS12005 (NAF16_11980)	ftsB	2547905..2548186 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=693560 NAF16_RS11970 WP_020429689.1 2542269..2543255(-) (rpoS) [Vibrio fluvialis strain V13]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=693560 NAF16_RS11970 WP_020429689.1 2542269..2543255(-) (rpoS) [Vibrio fluvialis strain V13]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATTGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCTCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTTGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGCTTTGGCTTGTTGGGTTATGAACCTTCTACGCTGGAAGAAGTCGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887