Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MF628_RS01770 Genome accession   NZ_CP097767
Coordinates   434465..435526 (-) Length   353 a.a.
NCBI ID   WP_220028091.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 5.31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 429465..440526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF628_RS01750 (MF628_000350) - 430341..430601 (-) 261 WP_007430104.1 stage V sporulation protein S -
  MF628_RS01755 (MF628_000351) - 430730..431524 (-) 795 WP_013309959.1 TIGR00282 family metallophosphoesterase -
  MF628_RS01760 (MF628_000352) rny 431601..433145 (-) 1545 WP_013309958.1 ribonuclease Y -
  MF628_RS01765 (MF628_000353) - 433520..434269 (-) 750 WP_250272075.1 regulatory protein RecX -
  MF628_RS01770 (MF628_000354) recA 434465..435526 (-) 1062 WP_220028091.1 recombinase RecA Machinery gene
  MF628_RS01775 (MF628_000355) cinA 435766..437034 (-) 1269 WP_250272076.1 competence/damage-inducible protein A Machinery gene
  MF628_RS01780 (MF628_000356) pgsA 437130..437717 (-) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MF628_RS01785 (MF628_000357) - 437928..438419 (-) 492 WP_025722076.1 YajQ family cyclic di-GMP-binding protein -
  MF628_RS01790 (MF628_000358) - 438564..438728 (-) 165 WP_023988236.1 hypothetical protein -
  MF628_RS01795 (MF628_000359) - 438813..439877 (-) 1065 WP_250272077.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38185.42 Da        Isoelectric Point: 4.9792

>NTDB_id=692092 MF628_RS01770 WP_220028091.1 434465..435526(-) (recA) [Paenibacillus polymyxa strain R 5.31]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQLREKIGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKNGNDVVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKTGSLIDIGTEYDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLVTTVVPPTEEELAQQAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=692092 MF628_RS01770 WP_220028091.1 434465..435526(-) (recA) [Paenibacillus polymyxa strain R 5.31]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTTGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCCACCCACATGCAAGTGGAAACGATCCCCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TCCCGAGAGGCCGAATTATTGAAGTATATGGACCAGAATCATCCGGTAAAACAACAGTAGCTCTTCACGCTATCGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCTTTTATCGACGCCGAGCATGCTCTTGATCCGTCGTATGCCAGCAAGCTGGGTGT
CAATATTGATGAGTTGTTGCTATCGCAGCCAGATACAGGAGAGCAAGCACTTGAGATTGCCGAAGCGCTTGTACGTAGTG
GAGCGGTAGACATTGTTGTTGTTGACTCTGTAGCGGCACTTGTGCCAAAAGCGGAGATTGAAGGTGAGATGGGAGATTCC
CATGTTGGTCTTCAAGCTCGTTTAATGTCACAGGCATTGCGTAAGCTGTCTGGTGCTATTAACAAGTCGAATACCATTGC
TATCTTTATTAACCAATTACGTGAAAAAATAGGTGTTATGTTCGGTAACCCTGAAACGACACCAGGTGGACGTGCTCTGA
AATTTTACTCTACAGTTCGTTTGGATGTCCGCCGCATTGAAAGCTTGAAAAACGGTAATGACGTTGTAGGTAACCGCACA
CGTATTAAAGTGGTGAAGAACAAAGTCGCACCTCCTTTCCGTCAGGCGGAAGTGGACATTATGTACGGCGAAGGCATCTC
CAAGACAGGCAGTTTGATTGACATTGGTACGGAGTATGACATTGTCGATAAGAGCGGAGCCTGGTATTCCTATGAAGGTG
AACGACTAGGTCAGGGACGTGAAAATGCGAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGTACGATTGAACAAAAA
ATTCGGGTGGCCAGTAATTTGGTAACGACGGTTGTTCCACCTACAGAAGAAGAGTTGGCACAGCAAGCCAAGGAAGAACA
GGAATTGCTGGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.404

91.218

0.779
  recA Latilactobacillus sakei subsp. sakei 23K

71.681

96.034

0.688
  recA Streptococcus mitis NCTC 12261

66.476

98.867

0.657
  recA Streptococcus mitis SK321

66.189

98.867

0.654
  recA Streptococcus mutans UA159

65.714

99.15

0.652
  recA Streptococcus pneumoniae Rx1

68.278

93.768

0.64
  recA Streptococcus pneumoniae D39

68.278

93.768

0.64
  recA Streptococcus pneumoniae R6

68.278

93.768

0.64
  recA Streptococcus pneumoniae TIGR4

68.278

93.768

0.64
  recA Streptococcus pyogenes NZ131

68.923

92.068

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.768

0.626
  recA Neisseria gonorrhoeae MS11

65.269

94.618

0.618
  recA Neisseria gonorrhoeae MS11

65.269

94.618

0.618
  recA Neisseria gonorrhoeae strain FA1090

65.269

94.618

0.618
  recA Pseudomonas stutzeri DSM 10701

63.343

96.601

0.612
  recA Vibrio cholerae strain A1552

67.188

90.652

0.609
  recA Acinetobacter baylyi ADP1

61.08

99.717

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.188

90.652

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.732

90.935

0.598
  recA Acinetobacter baumannii D1279779

63.72

92.918

0.592
  recA Ralstonia pseudosolanacearum GMI1000

67.857

87.252

0.592
  recA Glaesserella parasuis strain SC1401

64

92.068

0.589
  recA Helicobacter pylori 26695

61.176

96.317

0.589
  recA Helicobacter pylori strain NCTC11637

60.882

96.317

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

92.351

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

91.501

0.555