Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M2M59_RS05395 Genome accession   NZ_CP097314
Coordinates   1092292..1093335 (+) Length   347 a.a.
NCBI ID   WP_066785806.1    Uniprot ID   A0A143HAP3
Organism   Rummeliibacillus sp. G93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1087292..1098335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M59_RS05375 (M2M59_05375) - 1088357..1089157 (+) 801 WP_066791839.1 DUF3388 domain-containing protein -
  M2M59_RS05380 (M2M59_05380) - 1089175..1090095 (+) 921 WP_147194068.1 RodZ domain-containing protein -
  M2M59_RS05385 (M2M59_05385) pgsA 1090142..1090720 (+) 579 WP_066785797.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2M59_RS05390 (M2M59_05390) cinA 1090867..1092120 (+) 1254 WP_150283934.1 competence/damage-inducible protein A Machinery gene
  M2M59_RS05395 (M2M59_05395) recA 1092292..1093335 (+) 1044 WP_066785806.1 recombinase RecA Machinery gene
  M2M59_RS05400 (M2M59_05400) rny 1093581..1095137 (+) 1557 WP_147194064.1 ribonuclease Y -
  M2M59_RS05405 (M2M59_05405) - 1095284..1096081 (+) 798 WP_147194063.1 TIGR00282 family metallophosphoesterase -
  M2M59_RS05410 (M2M59_05410) - 1096199..1096465 (+) 267 WP_066785813.1 stage V sporulation protein S -
  M2M59_RS05415 (M2M59_05415) - 1096631..1096987 (+) 357 WP_249775707.1 SdpI family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37714.80 Da        Isoelectric Point: 4.7023

>NTDB_id=688362 M2M59_RS05395 WP_066785806.1 1092292..1093335(+) (recA) [Rummeliibacillus sp. G93]
MDERKAALDMALKQIEKQFGKGSVMKLGEQADRKVSTSSTGSLALDTALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIIIDSVAALTPKAEIEGEMGDS
HVGLQARLMSQALRKLSGIINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAETIKQGNDMVGNRT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIIDIGVEKDIVQKSGSWYAYEDERLGQGRENAKQFLKENPEVREEIAQK
IRVASGIGEQEYEVIEEPEENPTLFEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=688362 M2M59_RS05395 WP_066785806.1 1092292..1093335(+) (recA) [Rummeliibacillus sp. G93]
GTGGACGAACGGAAAGCGGCATTAGATATGGCCTTAAAACAAATTGAAAAACAATTTGGTAAAGGCTCTGTAATGAAATT
AGGCGAGCAAGCAGATCGTAAAGTTTCTACATCTTCTACTGGATCTTTAGCTCTTGATACAGCACTTGGAGTGGGTGGCT
ATCCCCGCGGCCGTGTGATAGAAATATATGGACCAGAAAGCTCTGGTAAAACAACAGTAGCACTTCATGCCATTGCAGAA
GTACAAGCAAATGGAGGACAAGCAGCTTTCATAGATGCAGAGCATGCGCTTGATCCAGTTTATGCGTCCAAACTAGGCGT
AAACATTGATGAATTATTGCTTTCTCAACCAGATACAGGTGAGCAAGCACTAGAAATTGCAGAAGCACTAGTTCGCAGTG
GTGCTATTGATATTATTATAATCGACTCTGTTGCTGCTCTTACACCAAAAGCAGAAATTGAAGGCGAGATGGGTGATTCC
CATGTCGGTTTGCAAGCGCGTTTGATGTCTCAAGCATTGCGTAAGCTATCCGGTATTATTAATAAATCAAATACAATTGC
CATCTTCATTAACCAAATCCGTGAAAAAATCGGTGTAATGTTTGGGAACCCTGAAACTACACCAGGCGGAAGAGCGCTTA
AGTTCTATTCATCAGTTCGTTTAGAGGTGCGTCGTGCTGAAACAATTAAGCAAGGTAATGATATGGTCGGTAACCGTACT
AAAATCAAAGTAGTAAAAAATAAAGTAGCTCCACCTTTTAAAACTGCAGAAGTTGATATTATGTATGGCGAAGGAATCTC
TAAAGAGGGAGAAATCATCGATATCGGCGTAGAAAAAGATATCGTACAAAAGAGCGGCTCATGGTATGCGTATGAAGATG
AACGTTTAGGCCAAGGTCGTGAAAATGCAAAACAATTCCTTAAAGAGAATCCAGAAGTACGTGAAGAAATTGCACAAAAA
ATTAGGGTGGCTTCAGGTATTGGTGAGCAAGAATATGAAGTTATCGAAGAACCAGAAGAAAATCCTACTCTATTTGAAGA
GTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

94.236

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

73.199

100

0.732
  recA Streptococcus pneumoniae TIGR4

67.347

98.847

0.666
  recA Streptococcus pneumoniae Rx1

67.347

98.847

0.666
  recA Streptococcus pneumoniae D39

67.347

98.847

0.666
  recA Streptococcus pneumoniae R6

67.347

98.847

0.666
  recA Streptococcus mitis SK321

68.997

94.813

0.654
  recA Streptococcus mutans UA159

67.964

96.254

0.654
  recA Streptococcus mitis NCTC 12261

68.693

94.813

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.389

94.813

0.648
  recA Streptococcus pyogenes NZ131

68.389

94.813

0.648
  recA Neisseria gonorrhoeae MS11

64.451

99.712

0.643
  recA Neisseria gonorrhoeae strain FA1090

64.451

99.712

0.643
  recA Neisseria gonorrhoeae MS11

64.451

99.712

0.643
  recA Vibrio cholerae strain A1552

66.563

93.084

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

93.084

0.62
  recA Acinetobacter baylyi ADP1

61.318

100

0.617
  recA Helicobacter pylori 26695

62.647

97.983

0.614
  recA Helicobacter pylori strain NCTC11637

62.647

97.983

0.614
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.202

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Pseudomonas stutzeri DSM 10701

65.325

93.084

0.608
  recA Acinetobacter baumannii D1279779

65.325

93.084

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.236

0.597
  recA Glaesserella parasuis strain SC1401

63.551

92.507

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

93.084

0.585