Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M2M59_RS05390 Genome accession   NZ_CP097314
Coordinates   1090867..1092120 (+) Length   417 a.a.
NCBI ID   WP_150283934.1    Uniprot ID   -
Organism   Rummeliibacillus sp. G93     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1085867..1097120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M59_RS05370 (M2M59_05370) ymfI 1087170..1087898 (+) 729 WP_249775706.1 elongation factor P 5-aminopentanone reductase -
  M2M59_RS05375 (M2M59_05375) - 1088357..1089157 (+) 801 WP_066791839.1 DUF3388 domain-containing protein -
  M2M59_RS05380 (M2M59_05380) - 1089175..1090095 (+) 921 WP_147194068.1 RodZ domain-containing protein -
  M2M59_RS05385 (M2M59_05385) pgsA 1090142..1090720 (+) 579 WP_066785797.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2M59_RS05390 (M2M59_05390) cinA 1090867..1092120 (+) 1254 WP_150283934.1 competence/damage-inducible protein A Machinery gene
  M2M59_RS05395 (M2M59_05395) recA 1092292..1093335 (+) 1044 WP_066785806.1 recombinase RecA Machinery gene
  M2M59_RS05400 (M2M59_05400) rny 1093581..1095137 (+) 1557 WP_147194064.1 ribonuclease Y -
  M2M59_RS05405 (M2M59_05405) - 1095284..1096081 (+) 798 WP_147194063.1 TIGR00282 family metallophosphoesterase -
  M2M59_RS05410 (M2M59_05410) - 1096199..1096465 (+) 267 WP_066785813.1 stage V sporulation protein S -
  M2M59_RS05415 (M2M59_05415) - 1096631..1096987 (+) 357 WP_249775707.1 SdpI family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45450.89 Da        Isoelectric Point: 5.6235

>NTDB_id=688361 M2M59_RS05390 WP_150283934.1 1090867..1092120(+) (cinA) [Rummeliibacillus sp. G93]
MNAEIIAVGSELLLGQITNSNARFISSQLAEIGINVYYHTVVGDNPNRLLDAITIAENRSDLIIFSGGLGPTKDDLTKET
IAKHLHIELEEDKDAMKSIVEFFQNQNKPMTENNRKQALVLKGSHVLANKNGMAPGMMYTASNHTYILLPGPPKEIEPMF
QFEAKPLLTSLVSKGQIVSHVLRFYGIGEAELEDKLQHLLENQTNPTLAPLASDGEVTIRITANADTTEEAWKKIRVAKE
EILHIAGDYFYGVDDDSISSVLTKMLMKNELTIAAAESLTAGLFQAELANNPGVGEALLGGMVTYNEQVKINQLGMAKEV
IEQHGVVSSECASEMARLVKEKFGSTIGVGLTGAAGPQAHGNKPAGTVWIGIAIGDEPPHTYRLQLSGSRNTNRLRATKS
AFYRLIQLLIEKGYERA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=688361 M2M59_RS05390 WP_150283934.1 1090867..1092120(+) (cinA) [Rummeliibacillus sp. G93]
ATGAATGCAGAAATTATTGCTGTGGGTTCTGAATTATTGTTAGGTCAAATAACTAATTCAAACGCACGGTTTATTTCAAG
TCAATTAGCTGAAATCGGAATAAATGTTTATTATCATACTGTTGTAGGTGACAATCCAAATCGACTACTTGATGCAATTA
CTATTGCAGAAAATCGCTCGGACCTTATTATTTTTTCAGGTGGATTAGGACCTACGAAGGATGACTTAACAAAGGAAACA
ATCGCAAAGCATTTACATATTGAACTCGAAGAAGACAAGGATGCAATGAAAAGCATAGTTGAATTCTTCCAAAACCAAAA
CAAACCAATGACTGAAAATAATCGCAAACAAGCTCTTGTTCTTAAAGGCTCGCATGTTTTAGCTAATAAAAATGGCATGG
CTCCTGGCATGATGTATACAGCGAGCAATCACACTTACATTCTTTTACCTGGCCCGCCGAAGGAAATTGAACCCATGTTC
CAATTCGAAGCAAAGCCATTGCTTACTTCTCTTGTTTCAAAAGGCCAAATTGTTTCTCACGTGCTTCGTTTTTACGGAAT
AGGCGAGGCTGAATTAGAAGATAAGCTTCAACATTTACTAGAAAACCAAACGAATCCAACGCTAGCACCATTAGCTTCTG
ATGGTGAAGTGACAATACGCATTACAGCGAATGCCGACACGACGGAAGAGGCATGGAAAAAAATTCGAGTAGCCAAAGAA
GAAATTTTACACATAGCAGGAGATTATTTTTACGGGGTAGACGATGATTCTATATCAAGCGTATTAACTAAAATGCTGAT
GAAGAATGAATTAACCATCGCTGCTGCTGAAAGTTTAACGGCTGGGCTATTCCAAGCAGAACTGGCTAATAATCCGGGGG
TGGGTGAAGCATTACTCGGCGGAATGGTCACATATAATGAGCAAGTAAAAATTAATCAATTAGGCATGGCGAAAGAAGTG
ATTGAACAGCATGGCGTTGTCAGCAGTGAATGTGCTAGTGAAATGGCGCGTTTAGTGAAGGAGAAATTTGGTTCGACTAT
TGGCGTTGGCTTAACAGGCGCAGCAGGTCCGCAAGCACACGGTAATAAACCAGCTGGTACTGTATGGATTGGTATTGCAA
TTGGTGATGAGCCTCCGCATACGTATCGCCTCCAATTATCTGGCAGCCGTAATACAAATCGACTTCGTGCAACGAAATCT
GCATTCTATCGTTTAATTCAGCTATTAATTGAAAAGGGCTATGAAAGAGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(256-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.801

0.513
  cinA Streptococcus mutans UA159

44.203

99.281

0.439
  cinA Streptococcus pneumoniae TIGR4

43.447

98.801

0.429
  cinA Streptococcus pneumoniae Rx1

43.204

98.801

0.427
  cinA Streptococcus pneumoniae R6

43.204

98.801

0.427
  cinA Streptococcus pneumoniae D39

42.961

98.801

0.424
  cinA Streptococcus mitis SK321

45.288

91.607

0.415
  cinA Streptococcus mitis NCTC 12261

44.764

91.607

0.41