Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | M2901_RS04940 | Genome accession | NZ_CP097072 |
| Coordinates | 1006112..1007149 (+) | Length | 345 a.a. |
| NCBI ID | WP_023605862.1 | Uniprot ID | V6Q564 |
| Organism | Vagococcus lutrae strain AT03 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 977385..1028507 | 1006112..1007149 | within | 0 |
Gene organization within MGE regions
Location: 977385..1028507
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2901_RS04795 (M2901_04795) | tsaE | 977862..978344 (+) | 483 | WP_248848422.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| M2901_RS04800 (M2901_04800) | - | 978486..980939 (+) | 2454 | WP_248856231.1 | 5'-nucleotidase C-terminal domain-containing protein | - |
| M2901_RS04805 (M2901_04805) | - | 981114..981914 (+) | 801 | WP_248856232.1 | CAP domain-containing protein | - |
| M2901_RS04810 (M2901_04810) | - | 981958..982494 (-) | 537 | WP_202585342.1 | 3'-5' exonuclease | - |
| M2901_RS04815 (M2901_04815) | - | 982491..983264 (-) | 774 | WP_248856233.1 | exodeoxyribonuclease III | - |
| M2901_RS04820 (M2901_04820) | murB | 983444..984346 (+) | 903 | WP_023605838.1 | UDP-N-acetylmuramate dehydrogenase | - |
| M2901_RS04825 (M2901_04825) | - | 984383..985390 (-) | 1008 | WP_248856234.1 | acryloyl-CoA reductase | - |
| M2901_RS04830 (M2901_04830) | - | 985572..986114 (+) | 543 | WP_248856235.1 | XRE family transcriptional regulator | - |
| M2901_RS04835 (M2901_04835) | - | 986133..987221 (+) | 1089 | WP_126762911.1 | ABC transporter ATP-binding protein | - |
| M2901_RS04840 (M2901_04840) | - | 987233..988069 (+) | 837 | WP_023605842.1 | ABC transporter permease | - |
| M2901_RS04845 (M2901_04845) | - | 988041..988868 (+) | 828 | WP_023605843.1 | ABC transporter permease | - |
| M2901_RS04850 (M2901_04850) | - | 988865..989938 (+) | 1074 | WP_023605844.1 | ABC transporter substrate-binding protein | - |
| M2901_RS04855 (M2901_04855) | ispE | 990066..990923 (+) | 858 | WP_248853046.1 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | - |
| M2901_RS04860 (M2901_04860) | - | 991001..991483 (+) | 483 | WP_222317002.1 | PTS glucose transporter subunit IIA | - |
| M2901_RS04865 (M2901_04865) | - | 991539..992477 (-) | 939 | WP_202585338.1 | metal ABC transporter substrate-binding protein | - |
| M2901_RS04870 (M2901_04870) | - | 992474..993328 (-) | 855 | WP_023605848.1 | metal ABC transporter permease | - |
| M2901_RS04875 (M2901_04875) | - | 993312..994064 (-) | 753 | WP_023605849.1 | metal ABC transporter ATP-binding protein | - |
| M2901_RS04880 (M2901_04880) | - | 994249..994932 (+) | 684 | WP_023605850.1 | metal ABC transporter ATP-binding protein | - |
| M2901_RS04885 (M2901_04885) | - | 994905..995732 (+) | 828 | WP_248856236.1 | metal ABC transporter permease | - |
| M2901_RS04890 (M2901_04890) | purR | 995894..996721 (+) | 828 | WP_222317005.1 | pur operon repressor | - |
| M2901_RS04895 (M2901_04895) | glmU | 996737..998110 (+) | 1374 | WP_248856237.1 | bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU | - |
| M2901_RS04900 (M2901_04900) | - | 998205..999176 (+) | 972 | WP_023605854.1 | ribose-phosphate diphosphokinase | - |
| M2901_RS04905 (M2901_04905) | mscL | 999220..999663 (-) | 444 | WP_248856238.1 | large conductance mechanosensitive channel protein MscL | - |
| M2901_RS04910 (M2901_04910) | - | 999868..1001139 (+) | 1272 | WP_023605856.1 | pitrilysin family protein | - |
| M2901_RS04915 (M2901_04915) | - | 1001129..1002430 (+) | 1302 | WP_248856239.1 | pitrilysin family protein | - |
| M2901_RS04920 (M2901_04920) | - | 1002433..1003158 (+) | 726 | WP_248856240.1 | SDR family oxidoreductase | - |
| M2901_RS04925 (M2901_04925) | - | 1003183..1004031 (+) | 849 | WP_248856241.1 | RodZ domain-containing protein | - |
| M2901_RS04930 (M2901_04930) | pgsA | 1004055..1004633 (+) | 579 | WP_248856242.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| M2901_RS04935 (M2901_04935) | cinA | 1004773..1006026 (+) | 1254 | WP_248856243.1 | competence/damage-inducible protein A | Machinery gene |
| M2901_RS04940 (M2901_04940) | recA | 1006112..1007149 (+) | 1038 | WP_023605862.1 | recombinase RecA | Machinery gene |
| M2901_RS04945 (M2901_04945) | rny | 1007369..1008928 (+) | 1560 | WP_126762880.1 | ribonuclease Y | - |
| M2901_RS04950 (M2901_04950) | - | 1009210..1010427 (-) | 1218 | WP_001291561.1 | tyrosine-type recombinase/integrase | - |
| M2901_RS04955 (M2901_04955) | - | 1010509..1010712 (-) | 204 | WP_000814511.1 | excisionase | - |
| M2901_RS04960 (M2901_04960) | - | 1010696..1010947 (+) | 252 | WP_001845478.1 | hypothetical protein | - |
| M2901_RS10120 | - | 1010981..1011109 (+) | 129 | WP_000301356.1 | hypothetical protein | - |
| M2901_RS04965 (M2901_04965) | - | 1011173..1011403 (-) | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| M2901_RS04970 (M2901_04970) | - | 1011400..1011822 (-) | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| M2901_RS04975 (M2901_04975) | - | 1012375..1012680 (+) | 306 | WP_049532578.1 | helix-turn-helix domain-containing protein | - |
| M2901_RS04980 (M2901_04980) | - | 1012740..1012907 (-) | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| M2901_RS04985 (M2901_04985) | tet(M) | 1013026..1014945 (-) | 1920 | WP_000691736.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| M2901_RS04990 (M2901_04990) | - | 1014961..1015077 (-) | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| M2901_RS04995 (M2901_04995) | - | 1015322..1016254 (-) | 933 | WP_001224318.1 | conjugal transfer protein | - |
| M2901_RS05000 (M2901_05000) | - | 1016251..1017252 (-) | 1002 | WP_000769868.1 | bifunctional lysozyme/C40 family peptidase | - |
| M2901_RS05005 (M2901_05005) | - | 1017249..1019426 (-) | 2178 | WP_000804748.1 | membrane protein | - |
| M2901_RS05010 (M2901_05010) | - | 1019429..1021876 (-) | 2448 | WP_000331160.1 | ATP-binding protein | - |
| M2901_RS05015 (M2901_05015) | - | 1021860..1022252 (-) | 393 | WP_248856244.1 | conjugal transfer protein | - |
| M2901_RS05020 (M2901_05020) | - | 1022341..1022838 (-) | 498 | WP_248856245.1 | antirestriction protein ArdA | - |
| M2901_RS05025 (M2901_05025) | - | 1022955..1023176 (-) | 222 | WP_001009056.1 | hypothetical protein | - |
| M2901_RS05030 (M2901_05030) | mobT | 1023219..1024424 (-) | 1206 | WP_000398284.1 | MobT family relaxase | - |
| M2901_RS05035 (M2901_05035) | - | 1024447..1024599 (-) | 153 | WP_031764745.1 | hypothetical protein | - |
| M2901_RS05040 (M2901_05040) | - | 1024602..1025987 (-) | 1386 | WP_000813488.1 | FtsK/SpoIIIE domain-containing protein | - |
| M2901_RS05045 (M2901_05045) | - | 1026016..1026402 (-) | 387 | WP_000985015.1 | YdcP family protein | - |
| M2901_RS05050 (M2901_05050) | - | 1026418..1026732 (-) | 315 | WP_000420682.1 | YdcP family protein | - |
| M2901_RS05055 (M2901_05055) | - | 1027119..1027982 (+) | 864 | WP_126762878.1 | alpha/beta fold hydrolase | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 37195.46 Da Isoelectric Point: 4.6635
>NTDB_id=686934 M2901_RS04940 WP_023605862.1 1006112..1007149(+) (recA) [Vagococcus lutrae strain AT03]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQISTVPSGSIALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDMVVVDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYATIRIDVRRAEQIKAGTEVMGNR
TRIKVVKNKVAPPFRMAEVDIMYGKGISKEGELLDMAVEQDIVDKSGAWYSYNEERMGQGRENSKQFLMDNPEIMAEIDA
KVRAAYGIGEPVDEELDVTLDLEEE
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQISTVPSGSIALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDMVVVDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYATIRIDVRRAEQIKAGTEVMGNR
TRIKVVKNKVAPPFRMAEVDIMYGKGISKEGELLDMAVEQDIVDKSGAWYSYNEERMGQGRENSKQFLMDNPEIMAEIDA
KVRAAYGIGEPVDEELDVTLDLEEE
Nucleotide
Download Length: 1038 bp
>NTDB_id=686934 M2901_RS04940 WP_023605862.1 1006112..1007149(+) (recA) [Vagococcus lutrae strain AT03]
TTGGCAGATGATCGTAAAGTGGCACTAGATGCTGCATTAAAAAAAATAGAAAAAAACTTTGGTAAAGGTTCCATTATGAA
GTTAGGGGAAAAAGTAGACACACAAATTTCAACTGTTCCTAGCGGTTCTATCGCGTTAGACGTCGCTTTAGGAGTGGGTG
GCTATCCGCGAGGCCGAATTATAGAAGTATATGGTCCTGAGAGTTCAGGTAAAACAACCGTAGCACTTCATGCCATTGCT
GAAGTACAAAAAAATGGTGGGACTGCGGCGTTTATTGACGCAGAGCATGCCTTAGACCCTGCATATGCTAAAAATTTAGG
GGTTAATATTGATGAGTTATTACTTTCTCAGCCAGATACTGGTGAGCAAGGGTTGGAGATTGCGGATGCATTAGTATCAA
GTGGTGCGATTGACATGGTGGTCGTTGACTCGGTCGCAGCTTTAGTTCCTAGAGCAGAGATTGACGGCGAGATGGGGGAC
ACACATGTGGGCTTACAAGCTCGTTTAATGTCACAAGCCCTAAGAAAACTATCTGGTTCGATTAACAAAACAAAAACCAT
TGCGATTTTTATTAACCAAATTCGTGAAAAAGTAGGAGTTATGTTCGGGAGCCCAGAAACCACTCCGGGTGGACGCGCCT
TAAAATTCTATGCAACGATTCGTATTGATGTACGCCGTGCGGAACAGATTAAAGCGGGTACGGAAGTGATGGGAAATCGT
ACGCGAATAAAAGTTGTAAAAAATAAGGTAGCCCCTCCTTTTAGAATGGCTGAAGTCGATATTATGTACGGAAAAGGGAT
ATCTAAGGAAGGCGAACTATTAGATATGGCCGTCGAACAAGATATCGTGGATAAAAGTGGCGCTTGGTATAGTTACAATG
AAGAGCGCATGGGACAAGGTCGTGAAAACTCTAAACAGTTTCTAATGGATAATCCTGAAATTATGGCAGAAATTGATGCT
AAAGTGCGAGCTGCTTATGGTATTGGCGAGCCTGTTGATGAAGAGTTAGATGTGACATTGGATTTAGAAGAAGAATAA
TTGGCAGATGATCGTAAAGTGGCACTAGATGCTGCATTAAAAAAAATAGAAAAAAACTTTGGTAAAGGTTCCATTATGAA
GTTAGGGGAAAAAGTAGACACACAAATTTCAACTGTTCCTAGCGGTTCTATCGCGTTAGACGTCGCTTTAGGAGTGGGTG
GCTATCCGCGAGGCCGAATTATAGAAGTATATGGTCCTGAGAGTTCAGGTAAAACAACCGTAGCACTTCATGCCATTGCT
GAAGTACAAAAAAATGGTGGGACTGCGGCGTTTATTGACGCAGAGCATGCCTTAGACCCTGCATATGCTAAAAATTTAGG
GGTTAATATTGATGAGTTATTACTTTCTCAGCCAGATACTGGTGAGCAAGGGTTGGAGATTGCGGATGCATTAGTATCAA
GTGGTGCGATTGACATGGTGGTCGTTGACTCGGTCGCAGCTTTAGTTCCTAGAGCAGAGATTGACGGCGAGATGGGGGAC
ACACATGTGGGCTTACAAGCTCGTTTAATGTCACAAGCCCTAAGAAAACTATCTGGTTCGATTAACAAAACAAAAACCAT
TGCGATTTTTATTAACCAAATTCGTGAAAAAGTAGGAGTTATGTTCGGGAGCCCAGAAACCACTCCGGGTGGACGCGCCT
TAAAATTCTATGCAACGATTCGTATTGATGTACGCCGTGCGGAACAGATTAAAGCGGGTACGGAAGTGATGGGAAATCGT
ACGCGAATAAAAGTTGTAAAAAATAAGGTAGCCCCTCCTTTTAGAATGGCTGAAGTCGATATTATGTACGGAAAAGGGAT
ATCTAAGGAAGGCGAACTATTAGATATGGCCGTCGAACAAGATATCGTGGATAAAAGTGGCGCTTGGTATAGTTACAATG
AAGAGCGCATGGGACAAGGTCGTGAAAACTCTAAACAGTTTCTAATGGATAATCCTGAAATTATGGCAGAAATTGATGCT
AAAGTGCGAGCTGCTTATGGTATTGGCGAGCCTGTTGATGAAGAGTTAGATGTGACATTGGATTTAGAAGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.