Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   M2904_RS07885 Genome accession   NZ_CP097053
Coordinates   1592044..1593081 (+) Length   345 a.a.
NCBI ID   WP_126762882.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1587044..1598081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2904_RS07860 (M2904_07860) - 1587061..1588362 (+) 1302 WP_248853054.1 pitrilysin family protein -
  M2904_RS07865 (M2904_07865) - 1588365..1589090 (+) 726 WP_248853056.1 SDR family oxidoreductase -
  M2904_RS07870 (M2904_07870) - 1589115..1589963 (+) 849 WP_248853057.1 RodZ domain-containing protein -
  M2904_RS07875 (M2904_07875) pgsA 1589987..1590565 (+) 579 WP_248853058.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2904_RS07880 (M2904_07880) cinA 1590705..1591958 (+) 1254 WP_248853059.1 competence/damage-inducible protein A Machinery gene
  M2904_RS07885 (M2904_07885) recA 1592044..1593081 (+) 1038 WP_126762882.1 recombinase RecA Machinery gene
  M2904_RS07890 (M2904_07890) rny 1593301..1594860 (+) 1560 WP_126762880.1 ribonuclease Y -
  M2904_RS07895 (M2904_07895) - 1595012..1595875 (+) 864 WP_126762878.1 alpha/beta fold hydrolase -
  M2904_RS07900 (M2904_07900) - 1595898..1596437 (+) 540 WP_222317018.1 DUF308 domain-containing protein -
  M2904_RS07905 (M2904_07905) - 1596613..1596813 (+) 201 WP_023605866.1 cold-shock protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37196.44 Da        Isoelectric Point: 4.6202

>NTDB_id=686727 M2904_RS07885 WP_126762882.1 1592044..1593081(+) (recA) [Vagococcus lutrae strain AT15]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQISTIPSGSIALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPAYAKNLGVDIDELLLSQPDTGEQGLEIADALVSSGAIDMVVVDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYATIRIDVRRAEQIKAGTEVMGNR
TRIKVVKNKVAPPFRMAEVDIMYGKGISKEGELLDMAVEQDIVDKSGAWYSYNEERMGQGRENSKQFLMDNPEIMAEIDA
KVRAAYGIGEPVDEELDVTLDLEEE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=686727 M2904_RS07885 WP_126762882.1 1592044..1593081(+) (recA) [Vagococcus lutrae strain AT15]
TTGGCAGATGATCGTAAAGTAGCACTAGATGCTGCATTAAAAAAAATAGAAAAAAACTTTGGTAAAGGCTCAATTATGAA
ATTAGGAGAAAAAGTAGACACACAAATATCGACCATTCCAAGTGGTTCCATTGCTTTAGATGTGGCATTAGGTGTGGGTG
GCTATCCTCGAGGGAGAATTGTAGAAGTTTATGGTCCAGAAAGTTCTGGTAAAACAACAGTGGCTCTTCATGCTATAGCA
GAGGTTCAAAAAAATGGTGGAACTGCTGCTTTTATCGATGCGGAACACGCTTTAGATCCTGCGTATGCAAAAAACTTAGG
GGTTGATATTGATGAACTATTATTATCTCAACCAGATACTGGGGAGCAAGGATTAGAAATAGCGGATGCATTAGTATCAA
GTGGCGCGATTGACATGGTGGTCGTTGACTCGGTGGCTGCTTTAGTACCTAGAGCCGAGATTGATGGTGAGATGGGTGAC
ACACATGTCGGATTACAAGCTCGTTTAATGTCACAAGCCCTAAGAAAATTATCTGGTTCGATTAACAAAACAAAAACCAT
TGCGATTTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGGAGCCCAGAAACCACTCCGGGTGGACGCGCCT
TAAAATTCTATGCGACGATTCGTATTGATGTACGCCGCGCTGAACAGATTAAAGCGGGTACGGAAGTGATGGGAAATCGT
ACGCGAATAAAAGTCGTAAAAAATAAGGTGGCCCCTCCTTTTAGAATGGCTGAAGTCGATATTATGTATGGTAAAGGGAT
ATCTAAGGAAGGCGAACTATTAGATATGGCCGTCGAACAAGATATCGTGGATAAGAGTGGCGCTTGGTATAGTTACAATG
AAGAGCGTATGGGACAAGGTCGTGAAAACTCTAAACAGTTTCTAATGGATAATCCTGAGATTATGGCAGAAATTGATGCT
AAAGTGCGAGCTGCTTATGGTATTGGCGAGCCTGTTGATGAAGAGTTAGATGTGACATTGGATTTAGAAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

77.876

98.261

0.765

  recA Bacillus subtilis subsp. subtilis str. 168

78.769

94.203

0.742

  recA Streptococcus mitis NCTC 12261

66.667

100

0.696

  recA Streptococcus pneumoniae TIGR4

68.935

97.971

0.675

  recA Streptococcus pneumoniae Rx1

68.935

97.971

0.675

  recA Streptococcus pneumoniae D39

68.935

97.971

0.675

  recA Streptococcus pneumoniae R6

68.935

97.971

0.675

  recA Streptococcus mutans UA159

69.88

96.232

0.672

  recA Streptococcus mitis SK321

70.213

95.362

0.67

  recA Streptococcus pyogenes NZ131

69.277

96.232

0.667

  recA Lactococcus lactis subsp. cremoris KW2

68.085

95.362

0.649

  recA Neisseria gonorrhoeae strain FA1090

66.869

95.362

0.638

  recA Neisseria gonorrhoeae MS11

66.869

95.362

0.638

  recA Neisseria gonorrhoeae MS11

66.869

95.362

0.638

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

94.783

0.617

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.918

95.362

0.6

  recA Ralstonia pseudosolanacearum GMI1000

66.134

90.725

0.6

  recA Acinetobacter baylyi ADP1

62.848

93.623

0.588

  recA Vibrio cholerae strain A1552

62.539

93.623

0.586

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

93.623

0.586

  recA Helicobacter pylori 26695

61.027

95.942

0.586

  recA Helicobacter pylori strain NCTC11637

61.027

95.942

0.586

  recA Pseudomonas stutzeri DSM 10701

62.037

93.913

0.583

  recA Acinetobacter baumannii D1279779

61.3

93.623

0.574

  recA Glaesserella parasuis strain SC1401

61.059

93.043

0.568

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

94.203

0.559