Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M2904_RS07880 Genome accession   NZ_CP097053
Coordinates   1590705..1591958 (+) Length   417 a.a.
NCBI ID   WP_248853059.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT15     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1585705..1596958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2904_RS07855 (M2904_07855) - 1585800..1587071 (+) 1272 WP_248853053.1 pitrilysin family protein -
  M2904_RS07860 (M2904_07860) - 1587061..1588362 (+) 1302 WP_248853054.1 pitrilysin family protein -
  M2904_RS07865 (M2904_07865) - 1588365..1589090 (+) 726 WP_248853056.1 SDR family oxidoreductase -
  M2904_RS07870 (M2904_07870) - 1589115..1589963 (+) 849 WP_248853057.1 RodZ domain-containing protein -
  M2904_RS07875 (M2904_07875) pgsA 1589987..1590565 (+) 579 WP_248853058.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2904_RS07880 (M2904_07880) cinA 1590705..1591958 (+) 1254 WP_248853059.1 competence/damage-inducible protein A Machinery gene
  M2904_RS07885 (M2904_07885) recA 1592044..1593081 (+) 1038 WP_126762882.1 recombinase RecA Machinery gene
  M2904_RS07890 (M2904_07890) rny 1593301..1594860 (+) 1560 WP_126762880.1 ribonuclease Y -
  M2904_RS07895 (M2904_07895) - 1595012..1595875 (+) 864 WP_126762878.1 alpha/beta fold hydrolase -
  M2904_RS07900 (M2904_07900) - 1595898..1596437 (+) 540 WP_222317018.1 DUF308 domain-containing protein -
  M2904_RS07905 (M2904_07905) - 1596613..1596813 (+) 201 WP_023605866.1 cold-shock protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45729.86 Da        Isoelectric Point: 4.5809

>NTDB_id=686726 M2904_RS07880 WP_248853059.1 1590705..1591958(+) (cinA) [Vagococcus lutrae strain AT15]
MRAEIIAVGTELLIGQVVNTNATFLSEELVGIGYDIYYHSVVGDNPERLKELIGQASQRSELIVLCGGLGPTEDDLTRDV
LADYLKEPMVLDPEGYDKIDTYMTRSGREMTENNRRQALTIQGGQAIPNDTGLAVGTFYQAETTSYLVLPGPPRELKPMF
YHHVIPLLKQQLPQTDQLYSRVLRFFGIGESQLVLELETLIHEQTNPTIAPYAGDTEVRLRLTVKATDETTASEMLDEME
EKIMSQVGDYFYGYGEENSLIKETVKALKAAKQTVASAESLTAGMFMSALGDVPGVSSVFNGGFVTYTNEMKSCLLKIDS
ALLAQHGAVSEACAGAMAEQARVLTKSDYGVALTGVAGPDKSEGQPVGSVWIGLSSATSGTQAYHFQLQRDRQYIRKSAM
MRAMDLLRRQVIAENHD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=686726 M2904_RS07880 WP_248853059.1 1590705..1591958(+) (cinA) [Vagococcus lutrae strain AT15]
ATGCGAGCAGAAATTATCGCAGTGGGTACGGAGCTATTAATTGGTCAAGTGGTTAATACCAATGCGACTTTTTTATCAGA
AGAATTAGTGGGGATTGGTTATGATATTTATTATCACAGTGTGGTAGGGGATAACCCAGAGCGTTTAAAAGAGTTAATTG
GACAAGCCTCTCAGCGAAGTGAATTGATTGTATTGTGTGGGGGATTAGGACCAACAGAAGATGATTTAACGCGAGATGTG
TTAGCTGATTATTTAAAGGAGCCGATGGTGTTAGATCCAGAGGGTTACGATAAGATTGATACCTATATGACTCGCTCTGG
TCGCGAGATGACGGAAAATAATCGTAGGCAAGCGTTAACGATTCAAGGAGGTCAAGCGATACCGAATGATACAGGCTTGG
CAGTCGGGACTTTTTATCAAGCTGAGACGACGAGTTATTTAGTCTTACCAGGACCGCCGCGTGAGTTAAAACCAATGTTT
TATCATCATGTTATTCCATTGTTAAAGCAGCAGTTACCTCAAACCGACCAACTGTATTCTCGCGTATTACGCTTTTTTGG
TATCGGGGAGTCACAGTTAGTTTTAGAATTAGAAACATTAATTCACGAGCAAACCAATCCGACCATTGCGCCATACGCAG
GAGATACAGAAGTTCGTTTACGACTGACAGTCAAAGCAACAGATGAGACAACAGCAAGTGAGATGCTAGATGAGATGGAA
GAAAAAATTATGTCTCAAGTAGGGGATTACTTCTATGGTTATGGGGAAGAAAATAGTTTGATTAAAGAAACCGTCAAGGC
CTTAAAAGCCGCGAAGCAAACGGTCGCCTCGGCCGAAAGTTTGACTGCCGGAATGTTTATGAGTGCATTGGGAGACGTTC
CAGGTGTTTCTAGTGTCTTTAATGGTGGCTTTGTCACATATACGAATGAGATGAAAAGTTGCTTATTAAAGATTGATTCC
GCTTTGCTTGCTCAACACGGGGCTGTTAGTGAGGCGTGTGCGGGTGCGATGGCAGAACAGGCTCGTGTGTTAACAAAGAG
TGATTATGGCGTAGCGTTAACAGGCGTAGCAGGTCCAGATAAAAGTGAGGGTCAGCCTGTAGGAAGTGTGTGGATTGGGC
TTTCTTCCGCGACAAGTGGGACACAGGCTTATCATTTTCAACTTCAGCGAGACCGTCAATATATTCGGAAAAGTGCCATG
ATGCGTGCAATGGACTTACTACGTCGTCAAGTGATAGCAGAAAATCACGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.118

100

0.508
  cinA Streptococcus pneumoniae Rx1

49.645

100

0.504
  cinA Streptococcus pneumoniae R6

49.645

100

0.504
  cinA Streptococcus mitis SK321

49.409

100

0.501
  cinA Streptococcus mitis NCTC 12261

49.409

100

0.501
  cinA Streptococcus pneumoniae D39

49.409

100

0.501
  cinA Streptococcus mutans UA159

48.687

100

0.489
  cinA Bacillus subtilis subsp. subtilis str. 168

46.569

97.842

0.456
  cinA Streptococcus suis isolate S10

42.336

98.561

0.417