Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EFK13_RS09290 Genome accession   NZ_CP096889
Coordinates   1795053..1796099 (+) Length   348 a.a.
NCBI ID   WP_129505668.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1790053..1801099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS09260 (EFK13_09260) - 1790060..1790788 (+) 729 WP_129505671.1 SDR family oxidoreductase -
  EFK13_RS09265 (EFK13_09265) - 1790869..1791126 (+) 258 WP_129505670.1 DUF3243 domain-containing protein -
  EFK13_RS09270 (EFK13_09270) - 1791256..1792047 (+) 792 WP_003220998.1 YmfK family protein -
  EFK13_RS09275 (EFK13_09275) rodZ 1792114..1792980 (+) 867 WP_240034908.1 cell shape determination protein RodZ -
  EFK13_RS09280 (EFK13_09280) pgsA 1793030..1793611 (+) 582 WP_064813824.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EFK13_RS09285 (EFK13_09285) cinA 1793630..1794880 (+) 1251 WP_124042862.1 competence/damage-inducible protein A Machinery gene
  EFK13_RS09290 (EFK13_09290) recA 1795053..1796099 (+) 1047 WP_129505668.1 recombinase RecA Machinery gene
  EFK13_RS09295 (EFK13_09295) - 1796268..1797443 (+) 1176 WP_129505667.1 serine hydrolase domain-containing protein -
  EFK13_RS09300 (EFK13_09300) rny 1797718..1799280 (+) 1563 WP_003221010.1 ribonuclease Y -
  EFK13_RS09305 (EFK13_09305) ymdB 1799350..1800144 (+) 795 WP_064813828.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  EFK13_RS09310 (EFK13_09310) spoVS 1800344..1800604 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38009.20 Da        Isoelectric Point: 4.9163

>NTDB_id=684874 EFK13_RS09290 WP_129505668.1 1795053..1796099(+) (recA) [Bacillus cabrialesii strain TE3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGAVQKQAEDAQEQLEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=684874 EFK13_RS09290 WP_129505668.1 1795053..1796099(+) (recA) [Bacillus cabrialesii strain TE3]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTACCAAGCGGCTCCCTCGCTCTTGATACAGCTCTAGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGTGGACAAGCTGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
CAACATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCTGAAGCGTTGGTTCGAAGCG
GCGCAGTTGACATCGTTGTTGTCGACTCTGTGGCGGCCCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGTTTACAAGCGCGCTTAATGTCTCAAGCGCTTCGTAAGCTCTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCACTGA
AATTCTACTCTTCCGTACGTCTTGAAGTGCGCCGAGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTGGATATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATCGATCTTGGAACTGAACTCGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAGCAATTCTTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGTGAACATTACGGCTTGGATAATCACGGAGCAGTGCAGAAGCAAGCTGAAGATGCACAAGAACAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.276

100

0.983
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae D39

65.625

100

0.664
  recA Streptococcus pneumoniae Rx1

65.625

100

0.664
  recA Streptococcus pneumoniae R6

65.625

100

0.664
  recA Streptococcus pneumoniae TIGR4

65.625

100

0.664
  recA Streptococcus mitis NCTC 12261

65.805

100

0.658
  recA Streptococcus mitis SK321

68.485

94.828

0.649
  recA Streptococcus mutans UA159

68.389

94.54

0.647
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Neisseria gonorrhoeae strain FA1090

65.046

94.54

0.615
  recA Neisseria gonorrhoeae MS11

65.046

94.54

0.615
  recA Neisseria gonorrhoeae MS11

65.046

94.54

0.615
  recA Ralstonia pseudosolanacearum GMI1000

64.939

94.253

0.612
  recA Helicobacter pylori 26695

65.231

93.391

0.609
  recA Helicobacter pylori strain NCTC11637

65.231

93.391

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baylyi ADP1

60.411

97.989

0.592
  recA Acinetobacter baumannii D1279779

60.947

97.126

0.592
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563