Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EFK13_RS09285 Genome accession   NZ_CP096889
Coordinates   1793630..1794880 (+) Length   416 a.a.
NCBI ID   WP_124042862.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1788630..1799880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS09255 (EFK13_09255) - 1788720..1790006 (+) 1287 WP_064813821.1 pitrilysin family protein -
  EFK13_RS09260 (EFK13_09260) - 1790060..1790788 (+) 729 WP_129505671.1 SDR family oxidoreductase -
  EFK13_RS09265 (EFK13_09265) - 1790869..1791126 (+) 258 WP_129505670.1 DUF3243 domain-containing protein -
  EFK13_RS09270 (EFK13_09270) - 1791256..1792047 (+) 792 WP_003220998.1 YmfK family protein -
  EFK13_RS09275 (EFK13_09275) rodZ 1792114..1792980 (+) 867 WP_240034908.1 cell shape determination protein RodZ -
  EFK13_RS09280 (EFK13_09280) pgsA 1793030..1793611 (+) 582 WP_064813824.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EFK13_RS09285 (EFK13_09285) cinA 1793630..1794880 (+) 1251 WP_124042862.1 competence/damage-inducible protein A Machinery gene
  EFK13_RS09290 (EFK13_09290) recA 1795053..1796099 (+) 1047 WP_129505668.1 recombinase RecA Machinery gene
  EFK13_RS09295 (EFK13_09295) - 1796268..1797443 (+) 1176 WP_129505667.1 serine hydrolase domain-containing protein -
  EFK13_RS09300 (EFK13_09300) rny 1797718..1799280 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45548.84 Da        Isoelectric Point: 5.0677

>NTDB_id=684873 EFK13_RS09285 WP_124042862.1 1793630..1794880(+) (cinA) [Bacillus cabrialesii strain TE3]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVEELSKACKEKGMTISSAESFTGGLFSEWLTDLSGASTLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=684873 EFK13_RS09285 WP_124042862.1 1793630..1794880(+) (cinA) [Bacillus cabrialesii strain TE3]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTGTTGCTCGGCCAGATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAATCCGGAGCGGCTGA
AACAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGTGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCGTTCCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTAATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCTGGAATGCTCACAGAGCATGAATCTCGCTTTTATATGCTTCTTCCCGGGCCGCCAAGCGAACTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGCTCAAATGAAAAAATTGTATCAACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATCG
CTCCTTTGGCGGCCGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTTTATTG
AAAGAAACAGAGGCTGTTATCTTAGAACGTGTTGGTGAATTTTTCTATGGCTACGATGATACTTCTCTCGTAGAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCATGACGATCTCCTCGGCGGAAAGCTTTACAGGCGGGCTGTTTTCTGAATGGCTGA
CAGATCTTAGCGGTGCTTCAACATTATTTGCCGGCGGCGTCGTTTGCTATACAAACGACGTAAAGCAGAATGTGCTTGGC
GTCAAGAAGGAAACATTAGATCGTTTCGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACAGGCAGCGATATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACCCAAGAAGGGCATGAGCCTGGACACGTGT
TTATCGGCATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGTGCCAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.837

100

0.978
  cinA Streptococcus mitis NCTC 12261

45.933

100

0.462
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.114

90.625

0.373