Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M1I95_RS12010 Genome accession   NZ_CP096885
Coordinates   2404416..2405453 (-) Length   345 a.a.
NCBI ID   WP_053427238.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2399416..2410453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS11990 (M1I95_11990) - 2400131..2401060 (-) 930 WP_318547269.1 dipeptidase -
  M1I95_RS11995 (M1I95_11995) spoVS 2401142..2401402 (-) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  M1I95_RS12000 (M1I95_12000) - 2401536..2402339 (-) 804 WP_317947786.1 TIGR00282 family metallophosphoesterase -
  M1I95_RS12005 (M1I95_12005) rny 2402448..2404007 (-) 1560 WP_048003983.1 ribonuclease Y -
  M1I95_RS12010 (M1I95_12010) recA 2404416..2405453 (-) 1038 WP_053427238.1 recombinase RecA Machinery gene
  M1I95_RS12015 (M1I95_12015) cinA 2405667..2406905 (-) 1239 WP_318547273.1 competence/damage-inducible protein A Machinery gene
  M1I95_RS12020 (M1I95_12020) pgsA 2406969..2407547 (-) 579 WP_053427240.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M1I95_RS12025 (M1I95_12025) - 2407601..2408509 (-) 909 WP_318547275.1 helix-turn-helix domain-containing protein -
  M1I95_RS12030 (M1I95_12030) - 2408529..2409320 (-) 792 WP_048003988.1 DUF3388 domain-containing protein -
  M1I95_RS12035 (M1I95_12035) - 2409493..2409750 (-) 258 WP_048003989.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37349.67 Da        Isoelectric Point: 5.0035

>NTDB_id=684765 M1I95_RS12010 WP_053427238.1 2404416..2405453(-) (recA) [Rossellomorea marisflavi strain B3]
MSERKAALDMALKQIEKQFGKGSIMKLGEKTDREIVTVPSGSLALDAALGVGGYPRGRIVEVYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDAIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIVDLGSELDIILKSGAWYSYNEERLGQGRENAKVFLKENPDIRNEIMLK
IRDHYGLDTGRAETEETGEMSLLDD

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=684765 M1I95_RS12010 WP_053427238.1 2404416..2405453(-) (recA) [Rossellomorea marisflavi strain B3]
GTGAGTGAACGTAAAGCAGCCTTGGATATGGCTTTAAAACAAATAGAGAAACAATTCGGTAAAGGTTCCATTATGAAATT
GGGAGAAAAGACCGACAGGGAGATCGTGACGGTACCAAGTGGATCACTTGCCCTTGACGCAGCGCTTGGGGTAGGCGGTT
ATCCACGTGGTAGGATTGTCGAAGTCTATGGACCGGAATCTTCTGGTAAGACAACCGTTGCCCTTCACGCCATTGCAGAG
GTACAGGCCCAAGGTGGCCAGGCAGCATTCATTGATGCTGAGCACGCATTGGATCCCGTTTACGCACAAAAATTGGGAGT
CAACATCGACGAACTCCTGCTTTCACAGCCGGATACAGGTGAACAGGCATTGGAAATCGCCGAAGCCCTCGTACGAAGCG
GTGCAGTCGATGCGATTGTGATTGACTCTGTGGCAGCCCTGGTGCCTAAAGCCGAGATTGAAGGGGAGATGGGTGATTCC
CACGTTGGTCTCCAAGCACGTCTCATGTCCCAGGCCTTGAGGAAGCTTTCTGGTGCCATCAACAAATCCAAGACCATTGC
CATCTTCATCAACCAGATCCGTGAAAAGGTCGGGGTTATGTTCGGAAACCCGGAAACGACACCTGGTGGACGCGCACTTA
AATTCTACTCTTCCGTACGTCTTGAAGTCCGTCGTGCTGAGACCCTTAAACAGGGGAATGAAATGGTAGGGAACAAGACA
AAGATCAAAGTCGTCAAGAACAAAGTCGCTCCTCCATTCCGTGTTGCAGAAGTGGATATCATGTACGGAGAAGGGATTTC
CAAAGAAGGTGAGATCGTAGACCTCGGTTCAGAACTCGATATCATCCTCAAGAGCGGTGCCTGGTATTCCTATAATGAAG
AGCGTCTTGGTCAAGGACGTGAAAATGCAAAAGTATTCCTCAAAGAGAATCCGGACATCCGCAATGAAATCATGCTGAAG
ATCCGTGATCACTATGGTTTGGATACAGGCCGCGCCGAGACAGAGGAAACGGGAGAAATGAGTCTGTTAGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.362

95.362

0.852
  recA Latilactobacillus sakei subsp. sakei 23K

77.231

94.203

0.728
  recA Streptococcus pneumoniae D39

67.836

99.13

0.672
  recA Streptococcus pneumoniae Rx1

67.836

99.13

0.672
  recA Streptococcus pneumoniae R6

67.836

99.13

0.672
  recA Streptococcus pneumoniae TIGR4

67.836

99.13

0.672
  recA Streptococcus mutans UA159

70.213

95.362

0.67
  recA Streptococcus mitis NCTC 12261

69.069

96.522

0.667
  recA Streptococcus mitis SK321

68.047

97.971

0.667
  recA Streptococcus pyogenes NZ131

69.207

95.072

0.658
  recA Lactococcus lactis subsp. cremoris KW2

68.485

95.652

0.655
  recA Ralstonia pseudosolanacearum GMI1000

68.371

90.725

0.62
  recA Neisseria gonorrhoeae strain FA1090

67.089

91.594

0.614
  recA Neisseria gonorrhoeae MS11

67.089

91.594

0.614
  recA Neisseria gonorrhoeae MS11

67.089

91.594

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.417

94.493

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.312

92.754

0.606
  recA Vibrio cholerae strain A1552

65.312

92.754

0.606
  recA Glaesserella parasuis strain SC1401

64.798

93.043

0.603
  recA Acinetobacter baumannii D1279779

62.84

95.942

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.783

0.6
  recA Pseudomonas stutzeri DSM 10701

64.263

92.464

0.594
  recA Helicobacter pylori 26695

62.769

94.203

0.591
  recA Helicobacter pylori strain NCTC11637

62.769

94.203

0.591
  recA Acinetobacter baylyi ADP1

63.551

93.043

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

94.203

0.58