Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M1I95_RS12015 Genome accession   NZ_CP096885
Coordinates   2405667..2406905 (-) Length   412 a.a.
NCBI ID   WP_318547273.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2400667..2411905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS11995 (M1I95_11995) spoVS 2401142..2401402 (-) 261 WP_034760060.1 stage V sporulation protein SpoVS -
  M1I95_RS12000 (M1I95_12000) - 2401536..2402339 (-) 804 WP_317947786.1 TIGR00282 family metallophosphoesterase -
  M1I95_RS12005 (M1I95_12005) rny 2402448..2404007 (-) 1560 WP_048003983.1 ribonuclease Y -
  M1I95_RS12010 (M1I95_12010) recA 2404416..2405453 (-) 1038 WP_053427238.1 recombinase RecA Machinery gene
  M1I95_RS12015 (M1I95_12015) cinA 2405667..2406905 (-) 1239 WP_318547273.1 competence/damage-inducible protein A Machinery gene
  M1I95_RS12020 (M1I95_12020) pgsA 2406969..2407547 (-) 579 WP_053427240.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M1I95_RS12025 (M1I95_12025) - 2407601..2408509 (-) 909 WP_318547275.1 helix-turn-helix domain-containing protein -
  M1I95_RS12030 (M1I95_12030) - 2408529..2409320 (-) 792 WP_048003988.1 DUF3388 domain-containing protein -
  M1I95_RS12035 (M1I95_12035) - 2409493..2409750 (-) 258 WP_048003989.1 DUF3243 domain-containing protein -
  M1I95_RS12040 (M1I95_12040) ymfI 2409995..2410708 (-) 714 WP_317951165.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44758.78 Da        Isoelectric Point: 4.7170

>NTDB_id=684766 M1I95_RS12015 WP_318547273.1 2405667..2406905(-) (cinA) [Rossellomorea marisflavi strain B3]
MNAEIIAVGSELLLGQIANTNAQFISERLAEVGVNVFYHTSVGDNPARLEEVIKHAEERADLLIFTGGLGPTKDDLTKET
IARSLGVSLSMDEEAMDSIRAYFEKVGRVMTPNNEKQALILEGSVPLKNDFGMAPGMVFQQSGKAYILLPGPPSEMRPMF
STYGVPAVMGLMKRKEVIHSRVLRFFGIGESQLEADLEELIDRQTNPTIAPLAGDGEVTLRLTAKHESKDVAETLLNELE
SEIRQTVGEYLYGYDQDSLEGVGFRLLKENGLTLAAAESLTAGLFQSSLASIAGASSVLEGGVVCYQDSVKRNVLNVREE
TLKNHGAVSRECAIELAANVRTLFKSDIGISFTGVAGPEAQGDLPPGTVWIGIASGDEEPRAYKLTLAGSRNGNRSRTVK
YGWHYLVKEYKE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=684766 M1I95_RS12015 WP_318547273.1 2405667..2406905(-) (cinA) [Rossellomorea marisflavi strain B3]
ATGAATGCAGAAATTATTGCAGTTGGATCTGAATTACTTTTGGGTCAGATTGCTAATACCAATGCCCAGTTCATATCAGA
AAGGCTTGCCGAGGTCGGAGTGAACGTGTTTTATCATACAAGCGTGGGGGATAACCCTGCGAGACTTGAAGAGGTCATCA
AACATGCCGAAGAGAGGGCGGACCTTCTTATCTTCACGGGAGGTCTCGGACCGACCAAGGATGATCTGACCAAAGAGACC
ATTGCAAGGAGTCTGGGTGTCAGCCTCTCCATGGATGAAGAAGCCATGGACTCCATCAGGGCTTATTTTGAAAAAGTCGG
CAGGGTGATGACTCCCAACAACGAAAAGCAGGCTCTGATTCTCGAAGGTTCGGTACCATTGAAAAATGATTTCGGCATGG
CACCCGGTATGGTGTTCCAACAGTCCGGGAAAGCGTATATCCTGTTGCCTGGCCCGCCTTCTGAGATGAGACCGATGTTC
AGTACCTACGGGGTTCCTGCCGTCATGGGCCTCATGAAACGAAAAGAAGTGATCCATTCCCGTGTCCTTCGATTCTTCGG
GATCGGGGAGTCGCAGCTAGAAGCCGACCTTGAAGAACTCATCGACCGGCAGACGAATCCGACGATCGCACCTCTTGCCG
GGGACGGAGAGGTTACTTTGCGATTGACGGCCAAGCACGAGTCAAAAGATGTCGCAGAGACTCTCCTGAATGAGTTGGAA
TCGGAAATTCGGCAAACCGTCGGGGAGTACCTATACGGATACGACCAGGACTCCCTTGAGGGGGTGGGCTTCAGGCTCCT
GAAAGAAAATGGCCTGACCCTTGCGGCAGCTGAAAGCCTCACGGCAGGCTTGTTCCAATCCAGCCTCGCCTCGATCGCAG
GCGCTTCTTCCGTCCTTGAGGGGGGAGTGGTATGCTATCAGGATTCTGTGAAGAGGAATGTGCTGAACGTACGGGAGGAA
ACGTTGAAGAATCACGGTGCGGTCAGTCGTGAATGCGCCATCGAGCTTGCGGCCAATGTGAGAACCTTGTTCAAATCCGA
TATAGGCATCAGTTTCACTGGTGTAGCAGGACCAGAAGCGCAAGGGGATCTGCCTCCTGGAACCGTTTGGATCGGCATCG
CTTCAGGTGATGAAGAGCCGAGGGCATACAAGCTCACACTGGCTGGAAGCCGAAACGGAAATCGCAGCCGGACAGTGAAA
TACGGGTGGCATTACTTGGTGAAGGAATACAAAGAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.52

99.029

0.609
  cinA Streptococcus mutans UA159

46.86

100

0.471
  cinA Streptococcus mitis SK321

46.411

100

0.471
  cinA Streptococcus mitis NCTC 12261

45.933

100

0.466
  cinA Streptococcus pneumoniae R6

45.694

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.694

100

0.464
  cinA Streptococcus pneumoniae TIGR4

45.694

100

0.464
  cinA Streptococcus pneumoniae D39

45.455

100

0.461
  cinA Streptococcus suis isolate S10

42.632

92.233

0.393