Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABRG53_RS20875 Genome accession   NZ_AP017560
Coordinates   4546672..4547826 (-) Length   384 a.a.
NCBI ID   WP_126389526.1    Uniprot ID   -
Organism   Pseudanabaena sp. ABRG5-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4541672..4552826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRG53_RS20860 (ABRG53_4117) - 4541816..4542679 (-) 864 WP_126389517.1 acyl-CoA desaturase -
  ABRG53_RS20865 (ABRG53_4118) - 4542803..4544047 (+) 1245 WP_225886780.1 TetR family transcriptional regulator -
  ABRG53_RS20870 (ABRG53_4119) - 4544475..4546628 (+) 2154 WP_126389523.1 IMS domain-containing protein -
  ABRG53_RS20875 (ABRG53_4120) recA 4546672..4547826 (-) 1155 WP_126389526.1 recombinase RecA Machinery gene
  ABRG53_RS20880 (ABRG53_4121) - 4548253..4548798 (+) 546 WP_126389529.1 NYN domain-containing protein -
  ABRG53_RS20885 (ABRG53_4122) - 4548961..4549623 (-) 663 WP_126389532.1 LuxR C-terminal-related transcriptional regulator -
  ABRG53_RS20890 (ABRG53_4123) - 4549730..4550155 (+) 426 WP_126389534.1 MAPEG family protein -
  ABRG53_RS20895 (ABRG53_4124) - 4550305..4551042 (+) 738 WP_126389537.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41154.15 Da        Isoelectric Point: 5.8415

>NTDB_id=68002 ABRG53_RS20875 WP_126389526.1 4546672..4547826(-) (recA) [Pseudanabaena sp. ABRG5-3]
MAKNSSATANSQVDKATPIAQAANAQLAKASISPEKKKALDAIMQKIEKDHGKGSIMRLGDATNMRVETIPSGALPLDLA
LGGGLPKGRVIEVYGPESSGKTTLVLHAIAEVQKRGGVAAFVDAEHALDPTYAASVGVDINNLLISQPDSGEMALEIVDN
LVRSMAVDIIAIDSVAALVPRAEIEGEMGASHVGLQARLMSQALRKITANVGRSNCIVIFLNQLRQKIGVSYGSPETTTG
GTALKFYASVRLDIRRIQTLKKGTEEYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCLVDLAEEMSIIVRKGAWY
SYQGDNIGQGRDNTIKYMEDKPEFAQEVERQVREKLSAGVAVSATKVVPEEIEPEDDDIPPDDF

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=68002 ABRG53_RS20875 WP_126389526.1 4546672..4547826(-) (recA) [Pseudanabaena sp. ABRG5-3]
ATGGCGAAAAATTCTTCTGCAACGGCAAATAGTCAAGTTGATAAGGCTACCCCGATCGCCCAAGCAGCAAATGCTCAGTT
AGCAAAGGCAAGTATCAGCCCTGAGAAAAAGAAGGCGCTCGATGCGATCATGCAAAAGATCGAGAAGGATCATGGCAAAG
GCTCGATCATGCGTTTGGGTGATGCGACGAACATGCGCGTTGAGACAATTCCTAGTGGCGCATTGCCCCTCGATCTTGCT
CTTGGTGGTGGCTTGCCCAAAGGACGGGTAATCGAAGTATATGGTCCTGAAAGCTCTGGGAAAACGACATTAGTACTCCA
TGCGATCGCCGAAGTCCAAAAACGTGGTGGTGTGGCTGCTTTCGTGGATGCTGAACATGCCCTCGACCCTACCTATGCGG
CAAGTGTTGGTGTCGATATTAATAACCTGCTGATTTCCCAGCCTGACTCAGGGGAAATGGCATTAGAAATTGTTGATAAT
CTCGTGCGATCGATGGCTGTCGATATTATTGCGATCGACTCCGTGGCAGCTCTCGTCCCCCGTGCCGAAATCGAAGGAGA
AATGGGTGCTTCCCATGTCGGTTTGCAAGCTAGATTGATGAGCCAAGCCCTGCGTAAAATCACGGCAAATGTAGGGCGAT
CGAACTGCATTGTTATTTTCCTAAACCAGTTACGTCAAAAGATTGGCGTATCCTATGGCAGCCCTGAAACGACTACAGGT
GGTACTGCGCTCAAGTTCTATGCCTCAGTGCGCCTCGATATTCGTCGTATCCAAACCCTCAAAAAAGGTACAGAAGAATA
TGGGATTCGTGCCAAGGTCAAGGTTGCTAAGAATAAAGTTGCCCCACCTTTCCGTATTGCTGAATTCGATATCATCTTTG
GTAAAGGCATTTCCACTCTCGGCTGTCTCGTTGATCTAGCCGAGGAAATGAGTATCATTGTCCGCAAGGGGGCATGGTAT
AGCTACCAAGGTGACAACATCGGTCAAGGTCGCGATAATACGATCAAGTACATGGAAGATAAGCCAGAATTTGCTCAGGA
GGTTGAGCGACAAGTGCGCGAAAAACTCTCCGCAGGTGTAGCGGTTTCAGCGACAAAGGTTGTCCCTGAAGAAATTGAGC
CTGAAGACGACGATATTCCTCCAGATGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(38-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.636

88.802

0.565
  recA Ralstonia pseudosolanacearum GMI1000

62.029

89.844

0.557
  recA Acinetobacter baylyi ADP1

65.528

83.854

0.549
  recA Pseudomonas stutzeri DSM 10701

60.58

89.844

0.544
  recA Glaesserella parasuis strain SC1401

56.667

93.75

0.531
  recA Latilactobacillus sakei subsp. sakei 23K

57.627

92.188

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.358

88.802

0.518
  recA Neisseria gonorrhoeae strain FA1090

59.568

84.375

0.503
  recA Neisseria gonorrhoeae MS11

59.568

84.375

0.503
  recA Neisseria gonorrhoeae MS11

59.568

84.375

0.503
  recA Bacillus subtilis subsp. subtilis str. 168

59.502

83.594

0.497
  recA Streptococcus pneumoniae Rx1

58.232

85.417

0.497
  recA Streptococcus pneumoniae TIGR4

58.232

85.417

0.497
  recA Streptococcus pneumoniae R6

58.232

85.417

0.497
  recA Streptococcus pneumoniae D39

58.232

85.417

0.497
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.317

83.854

0.497
  recA Vibrio cholerae strain A1552

59.317

83.854

0.497
  recA Streptococcus mitis NCTC 12261

58.769

84.635

0.497
  recA Streptococcus mitis SK321

58.769

84.635

0.497
  recA Helicobacter pylori 26695

55.202

90.104

0.497
  recA Helicobacter pylori strain NCTC11637

55.202

90.104

0.497
  recA Streptococcus mutans UA159

58.154

84.635

0.492
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.514

84.115

0.492
  recA Streptococcus pyogenes NZ131

57.187

85.156

0.487
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.353

89.323

0.477
  recA Lactococcus lactis subsp. cremoris KW2

55.247

84.375

0.466

Multiple sequence alignment