Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MY490_RS14330 Genome accession   NZ_CP096034
Coordinates   3014741..3015784 (-) Length   347 a.a.
NCBI ID   WP_248266332.1    Uniprot ID   -
Organism   Gottfriedia acidiceleris strain LH14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3009741..3020784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY490_RS14310 (MY490_14310) - 3009977..3010903 (-) 927 WP_248266329.1 dipeptidase -
  MY490_RS14315 (MY490_14315) spoVS 3011127..3011387 (-) 261 WP_044893696.1 stage V sporulation protein SpoVS -
  MY490_RS14320 (MY490_14320) - 3011514..3012305 (-) 792 WP_248266330.1 TIGR00282 family metallophosphoesterase -
  MY490_RS14325 (MY490_14325) rny 3012517..3014088 (-) 1572 WP_248266331.1 ribonuclease Y -
  MY490_RS14330 (MY490_14330) recA 3014741..3015784 (-) 1044 WP_248266332.1 recombinase RecA Machinery gene
  MY490_RS14335 (MY490_14335) cinA 3016034..3017293 (-) 1260 WP_248266333.1 competence/damage-inducible protein A Machinery gene
  MY490_RS14340 (MY490_14340) pgsA 3017314..3017892 (-) 579 WP_248266334.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MY490_RS14345 (MY490_14345) - 3017964..3018857 (-) 894 WP_248266335.1 RodZ domain-containing protein -
  MY490_RS14350 (MY490_14350) - 3018878..3019669 (-) 792 WP_097975425.1 DUF3388 domain-containing protein -
  MY490_RS14355 (MY490_14355) - 3019782..3020510 (-) 729 WP_248266336.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37732.98 Da        Isoelectric Point: 5.1888

>NTDB_id=679313 MY490_RS14330 WP_248266332.1 3014741..3015784(-) (recA) [Gottfriedia acidiceleris strain LH14]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRQISTISSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQLKQGNDIVGNKT
KIKVVKNKVAPPFRQADVDIMYGEGISKEGEILDIGSDLDIVLKSGAWYSYNEERLGQGRENAKQFLKENKEIRDTIKQS
IRLHHGLDNPVAITETDDEEQFSLLKE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=679313 MY490_RS14330 WP_248266332.1 3014741..3015784(-) (recA) [Gottfriedia acidiceleris strain LH14]
ATGAGTGATCGTCAAGCTGCATTAGATATGGCTTTAAAACAAATCGAAAAACAATTCGGTAAAGGTTCAATTATGAAACT
TGGAGAACAAACTGACCGCCAAATTTCAACTATTTCTAGTGGATCGTTAGCACTAGATGTTGCATTAGGTGTGGGTGGAT
ATCCAAGAGGTCGAATTATCGAAGTATATGGTCCTGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATCGCTGAA
GTTCAGGCAAATGGAGGACAAGCGGCGTTTATAGATGCTGAGCATGCATTAGATCCGGTTTATGCTCAAAAATTAGGTGT
AAACATTGATGAGTTATTATTATCTCAACCAGATACAGGTGAACAAGCACTTGAAATTGCTGAAGCATTAGTACGCAGTG
GTGCAATTGATATTATCGTAATTGACTCAGTAGCTGCATTAGTTCCAAAAGCAGAAATTGAAGGTGAGATGGGTGATGCT
CACGTAGGTCTACAAGCACGATTAATGTCTCAAGCATTACGTAAACTTTCTGGTGCAATTAACAAGTCAAAAACAATCGC
AATCTTCATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGTAATCCTGAAACGACTCCTGGTGGACGTGCGTTAA
AATTCTATTCTACAATTCGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGTAATGATATTGTAGGTAACAAAACA
AAGATTAAAGTAGTAAAAAATAAAGTAGCACCACCATTTAGACAAGCAGATGTAGACATTATGTATGGAGAAGGTATTTC
TAAAGAAGGAGAAATCCTTGATATTGGATCGGATTTAGATATCGTTCTTAAGAGTGGAGCATGGTATTCTTACAATGAAG
AGCGTCTTGGACAAGGTCGTGAGAATGCTAAGCAATTCTTAAAAGAAAATAAAGAAATTCGTGATACGATTAAACAATCT
ATCCGTCTTCACCATGGTTTAGATAACCCTGTTGCTATAACTGAAACAGATGACGAAGAACAATTCTCTTTATTAAAAGA
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.754

94.813

0.842
  recA Latilactobacillus sakei subsp. sakei 23K

71.387

99.712

0.712
  recA Streptococcus pneumoniae D39

67.442

99.135

0.669
  recA Streptococcus pneumoniae Rx1

67.442

99.135

0.669
  recA Streptococcus pneumoniae R6

67.442

99.135

0.669
  recA Streptococcus pneumoniae TIGR4

67.442

99.135

0.669
  recA Streptococcus mitis NCTC 12261

67.638

98.847

0.669
  recA Streptococcus mutans UA159

66.667

99.424

0.663
  recA Streptococcus pyogenes NZ131

65.517

100

0.657
  recA Streptococcus mitis SK321

68.788

95.101

0.654
  recA Lactococcus lactis subsp. cremoris KW2

65.875

97.118

0.64
  recA Neisseria gonorrhoeae strain FA1090

65.192

97.695

0.637
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Ralstonia pseudosolanacearum GMI1000

64.832

94.236

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

97.983

0.608
  recA Acinetobacter baumannii D1279779

60.345

100

0.605
  recA Glaesserella parasuis strain SC1401

60.345

100

0.605
  recA Vibrio cholerae strain A1552

64.375

92.219

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.375

92.219

0.594
  recA Helicobacter pylori strain NCTC11637

64.174

92.507

0.594
  recA Helicobacter pylori 26695

64.174

92.507

0.594
  recA Acinetobacter baylyi ADP1

60.294

97.983

0.591
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

93.948

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.308

93.66

0.565