Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MY490_RS14335 Genome accession   NZ_CP096034
Coordinates   3016034..3017293 (-) Length   419 a.a.
NCBI ID   WP_248266333.1    Uniprot ID   -
Organism   Gottfriedia acidiceleris strain LH14     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3011034..3022293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY490_RS14315 (MY490_14315) spoVS 3011127..3011387 (-) 261 WP_044893696.1 stage V sporulation protein SpoVS -
  MY490_RS14320 (MY490_14320) - 3011514..3012305 (-) 792 WP_248266330.1 TIGR00282 family metallophosphoesterase -
  MY490_RS14325 (MY490_14325) rny 3012517..3014088 (-) 1572 WP_248266331.1 ribonuclease Y -
  MY490_RS14330 (MY490_14330) recA 3014741..3015784 (-) 1044 WP_248266332.1 recombinase RecA Machinery gene
  MY490_RS14335 (MY490_14335) cinA 3016034..3017293 (-) 1260 WP_248266333.1 competence/damage-inducible protein A Machinery gene
  MY490_RS14340 (MY490_14340) pgsA 3017314..3017892 (-) 579 WP_248266334.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MY490_RS14345 (MY490_14345) - 3017964..3018857 (-) 894 WP_248266335.1 RodZ domain-containing protein -
  MY490_RS14350 (MY490_14350) - 3018878..3019669 (-) 792 WP_097975425.1 DUF3388 domain-containing protein -
  MY490_RS14355 (MY490_14355) - 3019782..3020510 (-) 729 WP_248266336.1 SDR family oxidoreductase -
  MY490_RS14360 (MY490_14360) - 3020692..3021975 (-) 1284 WP_248266337.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45897.53 Da        Isoelectric Point: 5.2215

>NTDB_id=679314 MY490_RS14335 WP_248266333.1 3016034..3017293(-) (cinA) [Gottfriedia acidiceleris strain LH14]
MKRAEIIAVGTELLLGQIANTNAQFLAKHLSALGYHHHFQTVVGDNSERLKSALEIASSRSDLIILTGGLGPTKDDLTKE
VVAEFVQESLVYHDESLDYIEQYFIKVNRPMTENNKKQALVINNAYVLLNNNGMAPGMVLEAKNKQFVLLPGPPKEMIPM
VEKELIPYFLKGKEASTIISKELKFFGIGESILETEILDLLENQSNPTIAPLASEGEVMLRVTASASNEQEAEKLIGQAE
EKIRDRVGQFIYGTNNENLFTVLSRKLKDFKLTISAAESLTGGLFSKRLTDIPGNSSIFKGSVVCYSNEMKQNLLHVPSD
ILNKSGAVSAECAKSLVENIQRLTGSNISISFTGEAGPSTLEDVPVGKVFIGIKIGDSDSIVKEFQFSGTREQIRLSSVK
NGANLLIKLINSSFESQDL

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=679314 MY490_RS14335 WP_248266333.1 3016034..3017293(-) (cinA) [Gottfriedia acidiceleris strain LH14]
ATGAAACGTGCTGAAATCATCGCAGTAGGTACAGAGCTACTTTTAGGTCAAATTGCAAATACAAATGCTCAATTTTTAGC
TAAACATTTATCTGCATTAGGATATCACCATCATTTCCAAACAGTTGTAGGAGACAATTCCGAACGACTTAAAAGTGCAT
TAGAAATTGCTTCATCAAGAAGTGATTTAATCATCTTAACTGGTGGACTTGGACCAACCAAGGATGATTTAACGAAAGAA
GTTGTTGCAGAATTTGTTCAAGAATCACTTGTTTACCACGATGAATCACTAGATTATATTGAACAATATTTTATTAAAGT
AAATCGACCAATGACTGAAAATAATAAAAAACAAGCATTAGTCATTAATAACGCATATGTTTTATTGAATAATAATGGTA
TGGCACCTGGAATGGTTCTTGAAGCGAAAAATAAACAATTTGTATTATTACCAGGACCACCTAAAGAAATGATCCCGATG
GTTGAGAAAGAACTAATTCCTTATTTTTTAAAAGGAAAGGAAGCAAGTACGATTATTTCCAAAGAGCTTAAGTTTTTTGG
CATCGGGGAATCGATTTTAGAAACTGAAATTCTTGATTTACTTGAAAATCAATCAAATCCAACAATTGCTCCTTTAGCGA
GTGAGGGAGAAGTAATGCTTCGAGTTACTGCAAGTGCTAGTAATGAACAAGAGGCAGAAAAACTAATTGGACAAGCTGAA
GAAAAAATACGCGACCGTGTTGGGCAGTTTATATATGGTACAAATAATGAAAACTTGTTTACAGTTTTATCAAGAAAGTT
AAAAGATTTTAAACTGACTATTTCTGCTGCTGAAAGTTTAACTGGAGGTCTGTTCAGTAAAAGACTGACAGATATTCCTG
GGAATTCGTCCATTTTTAAGGGGAGTGTTGTTTGTTATTCTAATGAAATGAAACAAAACCTTTTACATGTACCATCAGAC
ATTCTTAATAAAAGTGGTGCAGTAAGTGCAGAGTGTGCAAAATCACTAGTTGAAAATATTCAAAGATTAACAGGAAGTAA
TATTTCAATTAGTTTTACTGGTGAAGCAGGACCGTCTACATTAGAAGATGTGCCGGTAGGGAAAGTATTTATCGGTATAA
AAATTGGTGATTCTGATTCAATTGTAAAAGAGTTTCAATTCAGTGGTACTAGAGAACAAATAAGATTATCAAGTGTCAAA
AATGGCGCGAACTTATTGATTAAATTAATTAATTCAAGTTTTGAAAGTCAAGACTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.439

97.852

0.513
  cinA Streptococcus mutans UA159

44.878

97.852

0.439
  cinA Streptococcus mitis SK321

43.468

100

0.437
  cinA Streptococcus pneumoniae TIGR4

43.437

100

0.434
  cinA Streptococcus mitis NCTC 12261

43.23

100

0.434
  cinA Streptococcus pneumoniae Rx1

42.959

100

0.43
  cinA Streptococcus pneumoniae R6

42.959

100

0.43
  cinA Streptococcus pneumoniae D39

42.721

100

0.427