Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L8T27_RS07490 Genome accession   NZ_CP095743
Coordinates   1506319..1507368 (+) Length   349 a.a.
NCBI ID   WP_233314330.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1501319..1512368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS07465 (L8T27_007470) - 1501723..1501983 (+) 261 WP_233314335.1 DUF3243 domain-containing protein -
  L8T27_RS07470 (L8T27_007475) - 1502255..1503046 (+) 792 WP_233314334.1 YmfK family protein -
  L8T27_RS07475 (L8T27_007480) - 1503067..1503978 (+) 912 WP_233314333.1 RodZ domain-containing protein -
  L8T27_RS07480 (L8T27_007485) pgsA 1504225..1504803 (+) 579 WP_233314332.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L8T27_RS07485 (L8T27_007490) cinA 1504896..1506137 (+) 1242 WP_237941199.1 competence/damage-inducible protein A Machinery gene
  L8T27_RS07490 (L8T27_007495) recA 1506319..1507368 (+) 1050 WP_233314330.1 recombinase RecA Machinery gene
  L8T27_RS07495 (L8T27_007500) rny 1507810..1509381 (+) 1572 WP_233314778.1 ribonuclease Y -
  L8T27_RS07500 (L8T27_007505) - 1509522..1510319 (+) 798 WP_237941200.1 TIGR00282 family metallophosphoesterase -
  L8T27_RS07505 (L8T27_007510) spoVS 1510527..1510787 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -
  L8T27_RS07510 (L8T27_007515) - 1510980..1511915 (+) 936 WP_233314328.1 dipeptidase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37891.13 Da        Isoelectric Point: 4.8438

>NTDB_id=678034 L8T27_RS07490 WP_233314330.1 1506319..1507368(+) (recA) [Niallia sp. Man26]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRVVSTIPSGSLALDAALGVGGYPRGRIIETYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAETLKQGTDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGETIDLGSELDIVQKSGSWYSYNDERLGQGRENAKLFLKENKDILLEIQKK
IRDHYGLDNEVVLKPGQDEEDQESFELVD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=678034 L8T27_RS07490 WP_233314330.1 1506319..1507368(+) (recA) [Niallia sp. Man26]
TTGAGCGATCGTCAAGCTGCTTTAGAAATGGCATTAAAACAAATAGAGAAACAATTTGGTAAAGGTAGTATCATGAAATT
AGGAGAACAGACAGACCGGGTTGTCTCCACTATTCCGAGCGGTTCATTAGCATTGGATGCAGCACTTGGGGTTGGCGGAT
ATCCACGAGGCCGTATTATTGAAACCTATGGTCCTGAAAGCTCAGGTAAAACGACTGTTGCTCTACATGCAATTGCAGAA
GTTCAAGCAACTGGTGGACAAGCTGCATTTATCGATGCAGAGCATGCGTTAGACCCTGTTTACGCACAAAAGCTCGGTGT
AAACATTGATGAGCTGCTTCTTTCTCAGCCGGATACGGGAGAACAAGCGCTTGAAATCGCGGAAGCATTGGTAAGAAGTG
GTGCCGTTGATATCCTTGTTATCGATTCCGTTGCAGCACTTGTACCTAAAGCGGAAATTGAAGGAGAGATGGGTGATTCC
CATGTTGGTTTGCAAGCTCGCTTGATGTCACAAGCGCTTCGTAAGCTTTCAGGTGCAATCAACAAATCGAAAACAATCGC
GATTTTCATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAACCCTGAAACAACACCAGGTGGCCGTGCATTGA
AATTCTATTCAACTGTTCGCTTAGAAGTTCGCCGTGCTGAAACACTTAAACAAGGTACGGATATAGTCGGAAATAAAACG
AAAATCAAAGTTGTGAAAAATAAAGTAGCACCGCCGTTCCGAGTTGCGGAAGTCGACATCATGTATGGAGAAGGTATATC
CAAAGAAGGCGAGACAATTGATCTTGGTTCTGAGCTGGATATTGTTCAAAAGAGCGGATCTTGGTATTCTTATAATGATG
AGCGTTTAGGCCAAGGCCGTGAAAATGCGAAGCTTTTCCTTAAAGAAAACAAAGATATTCTTCTTGAAATTCAGAAGAAG
ATTCGTGACCACTACGGTTTGGATAACGAAGTTGTCTTAAAACCAGGACAAGATGAAGAAGACCAAGAGTCTTTTGAATT
AGTAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.79

95.415

0.857
  recA Latilactobacillus sakei subsp. sakei 23K

76.453

93.696

0.716
  recA Streptococcus pneumoniae R6

67.435

99.427

0.67
  recA Streptococcus pneumoniae TIGR4

67.435

99.427

0.67
  recA Streptococcus pneumoniae D39

67.435

99.427

0.67
  recA Streptococcus pneumoniae Rx1

67.435

99.427

0.67
  recA Streptococcus mitis NCTC 12261

67.052

99.14

0.665
  recA Streptococcus mitis SK321

67.055

98.281

0.659
  recA Streptococcus mutans UA159

65.242

100

0.656
  recA Lactococcus lactis subsp. cremoris KW2

67.262

96.275

0.648
  recA Streptococcus pyogenes NZ131

67.988

93.983

0.639
  recA Neisseria gonorrhoeae strain FA1090

63.478

98.854

0.628
  recA Neisseria gonorrhoeae MS11

63.478

98.854

0.628
  recA Neisseria gonorrhoeae MS11

63.478

98.854

0.628
  recA Vibrio cholerae strain A1552

63.664

95.415

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.664

95.415

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

97.994

0.607
  recA Helicobacter pylori strain NCTC11637

61.404

97.994

0.602
  recA Helicobacter pylori 26695

61.404

97.994

0.602
  recA Ralstonia pseudosolanacearum GMI1000

67.093

89.685

0.602
  recA Glaesserella parasuis strain SC1401

60.116

99.14

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.696

0.587
  recA Acinetobacter baumannii D1279779

62.422

92.264

0.576
  recA Acinetobacter baylyi ADP1

62.112

92.264

0.573
  recA Pseudomonas stutzeri DSM 10701

62.187

91.691

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

92.55

0.564