Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L8T27_RS07485 Genome accession   NZ_CP095743
Coordinates   1504896..1506137 (+) Length   413 a.a.
NCBI ID   WP_237941199.1    Uniprot ID   -
Organism   Niallia sp. Man26     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1499896..1511137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8T27_RS07460 (L8T27_007465) - 1500907..1501629 (+) 723 WP_233314336.1 SDR family oxidoreductase -
  L8T27_RS07465 (L8T27_007470) - 1501723..1501983 (+) 261 WP_233314335.1 DUF3243 domain-containing protein -
  L8T27_RS07470 (L8T27_007475) - 1502255..1503046 (+) 792 WP_233314334.1 YmfK family protein -
  L8T27_RS07475 (L8T27_007480) - 1503067..1503978 (+) 912 WP_233314333.1 RodZ domain-containing protein -
  L8T27_RS07480 (L8T27_007485) pgsA 1504225..1504803 (+) 579 WP_233314332.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L8T27_RS07485 (L8T27_007490) cinA 1504896..1506137 (+) 1242 WP_237941199.1 competence/damage-inducible protein A Machinery gene
  L8T27_RS07490 (L8T27_007495) recA 1506319..1507368 (+) 1050 WP_233314330.1 recombinase RecA Machinery gene
  L8T27_RS07495 (L8T27_007500) rny 1507810..1509381 (+) 1572 WP_233314778.1 ribonuclease Y -
  L8T27_RS07500 (L8T27_007505) - 1509522..1510319 (+) 798 WP_237941200.1 TIGR00282 family metallophosphoesterase -
  L8T27_RS07505 (L8T27_007510) spoVS 1510527..1510787 (+) 261 WP_016201204.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45150.60 Da        Isoelectric Point: 4.9680

>NTDB_id=678033 L8T27_RS07485 WP_237941199.1 1504896..1506137(+) (cinA) [Niallia sp. Man26]
MNAEIIAVGSELLLGQIANTNAQYISKQLANLGVNVYYHTAVGDNSTRLEDAIKIAESRSDLLIFTGGLGPTKDDLTKET
IALHLGKKLVFDEDALHSIEQYFVRSKRTMTENNKKQALVLEGSRILANDHGMAPGMFLEKDSRFYMLLPGPPKEMQPMF
DVYGYQALQEKLTTKELIVSRVLRFFGIGESLLETEIVDLIDKQSNPTIAPLAGEGEVTLRITCKHDSQEEAERLIDAAE
TEIFERVGEFFYGYDDTTLAKELSKELEKHGLTVAAAESLTGGLFQQEMTNIPGAGVVFGGGVVCYTNEVKQNVLSVKEE
TIKKHGVVSEQCAIELAENVAKLIGTDIGISFTGVAGPDELEGHPVGTVYIGIAVKGKPTISEKLLLGGGRSANRSRSSK
YGQFFLLKELKKL

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=678033 L8T27_RS07485 WP_237941199.1 1504896..1506137(+) (cinA) [Niallia sp. Man26]
ATGAATGCAGAAATCATAGCTGTTGGTTCTGAGCTACTGCTCGGTCAAATCGCCAACACAAACGCCCAATATATTTCAAA
GCAACTGGCAAATCTCGGAGTAAATGTTTATTATCACACAGCGGTTGGGGACAATTCAACCCGCTTGGAGGATGCGATTA
AGATTGCCGAGTCTCGTTCAGATCTTCTTATTTTTACCGGGGGCCTTGGTCCTACAAAGGATGATTTGACGAAGGAGACA
ATCGCTTTGCATCTTGGGAAAAAGCTTGTCTTTGATGAAGATGCTCTCCATTCAATCGAGCAATACTTTGTGCGTTCTAA
GCGCACGATGACAGAAAATAACAAGAAGCAGGCGCTAGTACTGGAAGGCTCCCGCATACTTGCAAATGATCATGGAATGG
CGCCTGGAATGTTCCTTGAAAAAGACAGCCGTTTCTACATGCTCCTTCCTGGTCCGCCTAAGGAAATGCAGCCAATGTTC
GATGTATACGGCTATCAGGCACTGCAGGAAAAGCTGACAACAAAAGAGCTTATCGTCTCAAGAGTGCTGCGCTTTTTCGG
CATAGGAGAATCGCTGCTGGAAACAGAAATTGTTGATTTGATTGATAAGCAGTCAAATCCGACAATCGCACCGCTGGCTG
GCGAAGGGGAAGTCACTCTCCGCATAACATGCAAGCATGATTCACAAGAGGAAGCAGAGCGTTTAATTGATGCTGCTGAA
ACAGAGATTTTTGAACGTGTCGGCGAATTCTTCTATGGGTATGATGACACGACTCTTGCTAAAGAGCTTTCTAAGGAATT
AGAGAAACACGGACTGACTGTCGCTGCGGCCGAAAGCCTCACCGGCGGATTGTTCCAGCAGGAAATGACGAACATCCCAG
GAGCAGGCGTTGTTTTTGGCGGTGGAGTGGTCTGCTATACGAATGAAGTGAAGCAAAATGTTCTTTCTGTTAAGGAAGAG
ACTATTAAGAAACACGGTGTTGTAAGTGAGCAGTGTGCAATCGAACTGGCTGAAAACGTCGCTAAACTGATTGGCACAGA
TATCGGAATCAGCTTCACAGGAGTCGCTGGTCCTGATGAGTTAGAAGGGCATCCGGTTGGAACTGTTTATATCGGAATTG
CTGTGAAAGGAAAACCGACTATTTCAGAAAAGCTTCTTCTTGGAGGAGGACGTTCGGCAAACAGAAGCAGATCGTCAAAA
TACGGACAATTTTTCCTGCTTAAAGAATTGAAGAAGCTGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.683

99.274

0.622
  cinA Streptococcus pneumoniae TIGR4

50.249

97.337

0.489
  cinA Streptococcus pneumoniae D39

49.386

98.547

0.487
  cinA Streptococcus pneumoniae Rx1

50

97.337

0.487
  cinA Streptococcus pneumoniae R6

50

97.337

0.487
  cinA Streptococcus mitis SK321

49.869

92.736

0.462
  cinA Streptococcus mitis NCTC 12261

49.347

92.736

0.458
  cinA Streptococcus mutans UA159

46.517

97.337

0.453
  cinA Streptococcus suis isolate S10

39.651

97.094

0.385