Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MW696_RS02175 Genome accession   NZ_CP095476
Coordinates   428451..429497 (+) Length   348 a.a.
NCBI ID   WP_046132861.1    Uniprot ID   A0AAE2EJX7
Organism   Bacillus glycinifermentans strain MGMM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 423451..434497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS02150 (MW696_02150) - 424140..424397 (+) 258 WP_048354762.1 DUF3243 domain-containing protein -
  MW696_RS02155 (MW696_02155) - 424638..425429 (+) 792 WP_046132857.1 YmfK family protein -
  MW696_RS02160 (MW696_02160) - 425447..426352 (+) 906 WP_057957560.1 RodZ family helix-turn-helix domain-containing protein -
  MW696_RS02165 (MW696_02165) pgsA 426415..426996 (+) 582 WP_247071623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MW696_RS02170 (MW696_02170) cinA 427016..428266 (+) 1251 WP_247071625.1 competence/damage-inducible protein A Machinery gene
  MW696_RS02175 (MW696_02175) recA 428451..429497 (+) 1047 WP_046132861.1 recombinase RecA Machinery gene
  MW696_RS02180 (MW696_02180) rny 429844..431403 (+) 1560 WP_046132862.1 ribonuclease Y -
  MW696_RS02185 (MW696_02185) - 431489..432286 (+) 798 WP_247071627.1 TIGR00282 family metallophosphoesterase -
  MW696_RS02190 (MW696_02190) spoVS 432489..432749 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  MW696_RS02195 (MW696_02195) - 432853..433767 (+) 915 WP_247071629.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37952.08 Da        Isoelectric Point: 4.7245

>NTDB_id=677135 MW696_RS02175 WP_046132861.1 428451..429497(+) (recA) [Bacillus glycinifermentans strain MGMM1]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQDERLGQGRENAKQFLKENKDVLLMIQEQ
IREHYGLDNNGVSAPKEEEEDIQEELEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=677135 MW696_RS02175 WP_046132861.1 428451..429497(+) (recA) [Bacillus glycinifermentans strain MGMM1]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCGCTTAAACAAATAGAAAAACAGTTTGGAAAAGGTTCCATTATGAAACT
CGGAGAACAAACCGAGACGAGAATTTCAACCGTTCCGAGCGGCTCTTTAGCGCTTGATACAGCCCTTGGGGTGGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGCCCTGAAAGCTCCGGTAAAACGACGGTGGCGCTTCACGCGATTGCCGAA
GTTCAGCAGCAGGGCGGACAGGCGGCGTTCATAGACGCCGAGCACGCGCTTGATCCTGTTTACGCGCAAAAATTAGGGGT
TAACATTGACGAGCTGCTGCTGTCCCAGCCTGACACGGGGGAACAGGCGCTTGAAATTGCGGAAGCGCTTGTCAGAAGCG
GAGCCGTTGATATCGTTGTCATCGACTCCGTTGCGGCGCTCGTGCCGAAGGCGGAAATCGAAGGAGACATGGGAGACTCG
CATGTCGGGCTGCAGGCCAGACTGATGTCCCAAGCGCTGCGGAAGCTTTCCGGGGCAATCAATAAATCAAAAACGATCGC
GATCTTTATTAACCAGATCCGCGAAAAAGTCGGCGTCATGTTCGGAAACCCTGAGACGACTCCAGGGGGAAGAGCCCTGA
AGTTCTATTCTTCCGTGCGGCTTGAAGTGCGCCGCGCCGAACAGCTCAAACAAGGCAACGACGTCATGGGGAACAAGACG
AAAATTAAAGTCGTGAAAAACAAAGTGGCGCCTCCATTCCGGACGGCCGAAGTAGACATTATGTACGGCGAAGGAATCTC
AAAAGAAGGGGAAATCATCGACCTCGGAACAGAGCTTGACATCGTCCAAAAAAGCGGGGCATGGTACTCCTATCAGGATG
AACGCCTTGGACAGGGCCGTGAAAACGCGAAGCAGTTCCTCAAAGAAAACAAAGATGTGCTTTTGATGATCCAAGAGCAG
ATCAGGGAGCATTACGGCCTGGATAACAACGGTGTTTCGGCTCCAAAAGAAGAAGAGGAAGACATTCAGGAAGAGCTCGA
ATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.988

95.402

0.925
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

93.966

0.701
  recA Streptococcus mitis SK321

67.638

98.563

0.667
  recA Streptococcus mitis NCTC 12261

67.638

98.563

0.667
  recA Streptococcus pneumoniae TIGR4

69.394

94.828

0.658
  recA Streptococcus pneumoniae Rx1

69.394

94.828

0.658
  recA Streptococcus pneumoniae D39

69.394

94.828

0.658
  recA Streptococcus pneumoniae R6

69.394

94.828

0.658
  recA Streptococcus mutans UA159

68.693

94.54

0.649
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

67.273

94.828

0.638
  recA Ralstonia pseudosolanacearum GMI1000

65.854

94.253

0.621
  recA Helicobacter pylori 26695

62.573

98.276

0.615
  recA Helicobacter pylori strain NCTC11637

62.573

98.276

0.615
  recA Neisseria gonorrhoeae strain FA1090

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

97.414

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Acinetobacter baylyi ADP1

60

99.138

0.595
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baumannii D1279779

60.526

98.276

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Pseudomonas stutzeri DSM 10701

62.5

91.954

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

92.816

0.566