Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MW696_RS02170 Genome accession   NZ_CP095476
Coordinates   427016..428266 (+) Length   416 a.a.
NCBI ID   WP_247071625.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain MGMM1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 422016..433266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW696_RS02145 (MW696_02145) - 423338..424069 (+) 732 WP_048354761.1 SDR family oxidoreductase -
  MW696_RS02150 (MW696_02150) - 424140..424397 (+) 258 WP_048354762.1 DUF3243 domain-containing protein -
  MW696_RS02155 (MW696_02155) - 424638..425429 (+) 792 WP_046132857.1 YmfK family protein -
  MW696_RS02160 (MW696_02160) - 425447..426352 (+) 906 WP_057957560.1 RodZ family helix-turn-helix domain-containing protein -
  MW696_RS02165 (MW696_02165) pgsA 426415..426996 (+) 582 WP_247071623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MW696_RS02170 (MW696_02170) cinA 427016..428266 (+) 1251 WP_247071625.1 competence/damage-inducible protein A Machinery gene
  MW696_RS02175 (MW696_02175) recA 428451..429497 (+) 1047 WP_046132861.1 recombinase RecA Machinery gene
  MW696_RS02180 (MW696_02180) rny 429844..431403 (+) 1560 WP_046132862.1 ribonuclease Y -
  MW696_RS02185 (MW696_02185) - 431489..432286 (+) 798 WP_247071627.1 TIGR00282 family metallophosphoesterase -
  MW696_RS02190 (MW696_02190) spoVS 432489..432749 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45399.73 Da        Isoelectric Point: 5.5416

>NTDB_id=677134 MW696_RS02170 WP_247071625.1 427016..428266(+) (cinA) [Bacillus glycinifermentans strain MGMM1]
MKLERKAEIIAVGSELLLGQIANTNAQFISKHLAEIGINVFYHTAVGDNPERLKRVIQTAQERSDFIIFSGGLGPTKDDL
TKETIARVIGRPLQLDEEAFQSIEDYFKKTNRTMSPNNRKQALVLEGSDVLPNRFGMAPGMLLQHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPAETERLL
KETEDRILERVGEFFYGYDDTSLVEELAKACVRKGLTLSAAESFTGGLFSSWLTELSGASEYFKGGAVCYTNELKVSAAG
VSGDTLERFGAVSAQCAKELAAGIRSKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVDGKPEEAHEFMFAGSRSAVRK
RSAKYGCHLLLHILGK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=677134 MW696_RS02170 WP_247071625.1 427016..428266(+) (cinA) [Bacillus glycinifermentans strain MGMM1]
ATGAAACTTGAAAGAAAAGCTGAAATCATCGCCGTCGGTTCAGAGCTTTTGCTCGGACAGATCGCTAATACAAACGCACA
GTTTATCAGCAAGCATTTGGCGGAAATCGGAATCAACGTTTTTTATCATACAGCGGTCGGAGACAACCCTGAACGCTTGA
AACGGGTCATTCAAACCGCCCAGGAGCGGTCTGATTTCATCATCTTCTCAGGGGGTCTTGGGCCGACGAAAGACGATTTG
ACAAAAGAAACGATCGCACGGGTCATCGGGCGTCCCCTTCAGCTTGATGAGGAAGCATTTCAATCGATTGAAGACTATTT
CAAAAAAACGAACCGGACGATGTCTCCGAACAATCGAAAGCAGGCGCTCGTTCTCGAAGGTTCGGATGTGCTGCCAAACC
GGTTCGGAATGGCTCCGGGGATGCTGCTTCAGCATGAATCGCGTTTTTACATGCTGCTTCCGGGGCCCCCGAAGGAACTT
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTAGAAAAACTCGGTTCAAAGGAGAAGATCGTCTCAAGAGTGCT
GCGCTTCTTCGGAATCGGTGAATCCCAGCTTGAAACGGATTTGGAAGACCTTATCGATGCGCAGACGAACCCGACGATCG
CTCCTTTGGCGGCAGATGGTGAAGTCACCCTCAGGCTGACGGCAAAACACGCCGATCCGGCTGAGACGGAACGCCTTCTA
AAAGAAACGGAAGACCGCATTTTAGAGCGCGTCGGCGAGTTCTTTTACGGATACGATGATACATCGCTTGTCGAAGAGCT
TGCGAAAGCCTGCGTCCGCAAAGGACTGACGCTGTCTGCTGCGGAAAGCTTTACAGGAGGGCTTTTTTCCAGCTGGCTGA
CGGAATTGAGCGGGGCCTCCGAATACTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTTTCAGCTGCAGGT
GTTTCCGGAGACACGCTCGAGCGCTTTGGAGCCGTCAGCGCGCAATGCGCGAAGGAGCTTGCAGCGGGCATCAGAAGCAA
AACCGGAAGCGACATCGGCATCAGCTTTACCGGTGTGGCCGGTCCGAATACGCAGGAAGGGCATCCTGCCGGGAAGGTAT
TTATCGGCATCTCGGTCGACGGCAAACCGGAGGAAGCGCACGAGTTCATGTTCGCGGGCTCAAGATCGGCCGTCAGGAAG
CGTTCTGCCAAATACGGCTGCCATCTGCTCCTGCACATTTTGGGTAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

79.227

99.519

0.788
  cinA Streptococcus pneumoniae TIGR4

46.135

99.519

0.459
  cinA Streptococcus mitis SK321

45.894

99.519

0.457
  cinA Streptococcus mitis NCTC 12261

45.894

99.519

0.457
  cinA Streptococcus pneumoniae Rx1

45.652

99.519

0.454
  cinA Streptococcus pneumoniae R6

45.652

99.519

0.454
  cinA Streptococcus pneumoniae D39

45.411

99.519

0.452
  cinA Streptococcus mutans UA159

45.278

99.279

0.45
  cinA Streptococcus suis isolate S10

41.114

90.625

0.373