Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUG87_RS05640 Genome accession   NZ_CP095462
Coordinates   1084699..1085739 (-) Length   346 a.a.
NCBI ID   WP_247086355.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1079699..1090739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS05620 (MUG87_05620) - 1080453..1081373 (-) 921 WP_247086349.1 dipeptidase -
  MUG87_RS05625 (MUG87_05625) spoVS 1081427..1081687 (-) 261 WP_124563708.1 stage V sporulation protein SpoVS -
  MUG87_RS05630 (MUG87_05630) - 1081826..1082620 (-) 795 WP_247086351.1 TIGR00282 family metallophosphoesterase -
  MUG87_RS05635 (MUG87_05635) rny 1082792..1084354 (-) 1563 WP_247086353.1 ribonuclease Y -
  MUG87_RS05640 (MUG87_05640) recA 1084699..1085739 (-) 1041 WP_247086355.1 recombinase RecA Machinery gene
  MUG87_RS05645 (MUG87_05645) cinA 1085903..1087129 (-) 1227 WP_247086357.1 competence/damage-inducible protein A Machinery gene
  MUG87_RS05650 (MUG87_05650) pgsA 1087142..1087729 (-) 588 WP_247086359.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUG87_RS05655 (MUG87_05655) - 1087789..1088673 (-) 885 WP_247086361.1 RodZ domain-containing protein -
  MUG87_RS05660 (MUG87_05660) - 1088686..1089471 (-) 786 WP_247086363.1 DUF3388 domain-containing protein -
  MUG87_RS05665 (MUG87_05665) - 1089636..1089887 (-) 252 WP_124563700.1 DUF3243 domain-containing protein -
  MUG87_RS05670 (MUG87_05670) - 1089953..1090663 (-) 711 WP_247086365.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37550.80 Da        Isoelectric Point: 5.1922

>NTDB_id=676946 MUG87_RS05640 WP_247086355.1 1084699..1085739(-) (recA) [Ectobacillus sp. JY-23]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQSERQISTISSGSLALDVALGVGGYPRGRIIETYGPESSGKTTVALHAIAE
VQARGGQAAFIDAEHALDPVYAQKLGVNIDALLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEILDMATELDIVQKSGAWYSYQDERLGQGRENAKIFLRENPHVRDDIALK
VRAHYGIDSDGPRTVIEEDEPTLLDE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=676946 MUG87_RS05640 WP_247086355.1 1084699..1085739(-) (recA) [Ectobacillus sp. JY-23]
ATGAGCGATCGCCAAGCAGCACTAGAAATGGCGTTAAAACAAATAGAAAAGCAGTTCGGTAAAGGATCTATCATGAAGCT
AGGAGAGCAATCTGAACGTCAGATTTCTACAATTTCCAGTGGGTCTCTAGCATTGGATGTTGCTTTAGGTGTAGGTGGTT
ACCCACGCGGACGAATTATTGAAACATATGGACCTGAGTCTTCTGGTAAAACTACAGTCGCTCTTCATGCGATTGCAGAA
GTACAAGCACGCGGTGGCCAAGCTGCATTTATTGATGCAGAACACGCTCTTGATCCTGTGTATGCACAAAAGCTCGGTGT
AAATATAGATGCTTTATTGTTATCACAGCCTGATACAGGTGAGCAAGGGTTGGAAATTGCAGAAGCGTTGGTACGCAGCG
GCGCGGTAGATATTATTGTTATTGATTCTGTAGCAGCTCTTGTTCCAAAAGCTGAAATTGAAGGAGAAATGGGAGATTCT
CATGTTGGTTTGCAAGCACGCCTTATGTCACAAGCCCTCCGCAAGCTTTCTGGTGCAATTAATAAATCTAAAACCATTGC
TATCTTTATCAATCAGATTCGTGAAAAAGTAGGAGTTATGTTTGGTAACCCTGAGACAACACCAGGTGGCCGTGCATTAA
AGTTCTATTCAACAGTACGTTTAGAAGTGCGCCGTGCCGAGCAGTTAAAACAAGGTAACGATATGGTTGGTAATAAAACA
AAAATTAAGGTGGTAAAAAATAAAGTGGCACCTCCATTCCGTGTAGCGGAAGTCGATATCATGTATGGAGAGGGAATTTC
TAAAGAAGGTGAAATTCTTGATATGGCAACAGAACTTGATATTGTACAAAAGAGCGGTGCTTGGTATTCCTATCAAGACG
AGCGTCTTGGTCAAGGTCGAGAAAATGCAAAGATCTTTTTGCGTGAAAACCCACACGTTAGAGATGATATTGCTTTAAAA
GTACGTGCTCACTATGGAATTGATTCTGACGGACCTCGCACTGTTATTGAAGAAGACGAGCCAACTTTATTAGATGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.405

95.665

0.827
  recA Latilactobacillus sakei subsp. sakei 23K

76.744

99.422

0.763
  recA Streptococcus mutans UA159

68.035

98.555

0.671
  recA Streptococcus pneumoniae R6

70

95.376

0.668
  recA Streptococcus mitis NCTC 12261

70

95.376

0.668
  recA Streptococcus pneumoniae TIGR4

70

95.376

0.668
  recA Streptococcus pneumoniae Rx1

70

95.376

0.668
  recA Streptococcus pneumoniae D39

70

95.376

0.668
  recA Streptococcus mitis SK321

70

95.376

0.668
  recA Streptococcus pyogenes NZ131

69.207

94.798

0.656
  recA Lactococcus lactis subsp. cremoris KW2

67.868

96.243

0.653
  recA Ralstonia pseudosolanacearum GMI1000

65.951

94.22

0.621
  recA Neisseria gonorrhoeae strain FA1090

64.22

94.509

0.607
  recA Neisseria gonorrhoeae MS11

64.22

94.509

0.607
  recA Neisseria gonorrhoeae MS11

64.22

94.509

0.607
  recA Helicobacter pylori strain NCTC11637

63.385

93.931

0.595
  recA Helicobacter pylori 26695

63.385

93.931

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.997

94.509

0.595
  recA Acinetobacter baumannii D1279779

59.71

99.711

0.595
  recA Acinetobacter baylyi ADP1

59.13

99.711

0.59
  recA Vibrio cholerae strain A1552

63.438

92.486

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

92.486

0.587
  recA Pseudomonas stutzeri DSM 10701

60.059

97.688

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.963

94.22

0.584
  recA Glaesserella parasuis strain SC1401

63.009

92.197

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.736

94.22

0.572