Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MU539_RS04255 Genome accession   NZ_CP095384
Coordinates   866779..867831 (+) Length   350 a.a.
NCBI ID   WP_033571062.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain VHProbi M14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 861779..872831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU539_RS04235 (MU539_04225) ymfI 862917..863645 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  MU539_RS04240 (MU539_04230) - 863732..864667 (+) 936 WP_033571059.1 helix-turn-helix domain-containing protein -
  MU539_RS04245 (MU539_04235) pgsA 864664..865257 (+) 594 WP_033571060.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MU539_RS04250 (MU539_04240) cinA 865486..866727 (+) 1242 WP_033571061.1 competence/damage-inducible protein A Machinery gene
  MU539_RS04255 (MU539_04245) recA 866779..867831 (+) 1053 WP_033571062.1 recombinase RecA Machinery gene
  MU539_RS04260 (MU539_04250) rny 868353..869924 (+) 1572 WP_005684479.1 ribonuclease Y -
  MU539_RS04265 (MU539_04255) - 870013..870669 (-) 657 WP_152600903.1 YigZ family protein -
  MU539_RS04270 (MU539_04260) - 870697..871962 (+) 1266 WP_033571064.1 DEAD/DEAH box helicase -
  MU539_RS04275 (MU539_04265) - 872121..872639 (+) 519 WP_050512808.1 ComF family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37630.98 Da        Isoelectric Point: 5.5069

>NTDB_id=676620 MU539_RS04255 WP_033571062.1 866779..867831(+) (recA) [Lacticaseibacillus rhamnosus strain VHProbi M14]
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQAEMETDTITSAAS

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=676620 MU539_RS04255 WP_033571062.1 866779..867831(+) (recA) [Lacticaseibacillus rhamnosus strain VHProbi M14]
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGGGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCGCGTGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGAAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCGGAAAATGCCATGGATCCCAAATATGCGGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACCGGTGAACAAGGATTAGAAATTGCCGATGAGCTGGTTG
CATCGGGTGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTTGTACCGCGCGCAGAAATTGAAGGGGACATGGGA
GATGCACACGTTGGGTTACAGGCACGGCTAATGTCACAGGCCTTACGAAAGTTGTCTGGGGCGATCAATAAGACCAAAAC
AATTGCCTTGTTCATCAACCAGATCCGGGAAAAAGTCGGCATTGTGTTCGGCAATCCTGAAATTACGCCAGGTGGTCGGG
CGCTGAAATTTTATGCTACTGTGCGTATGGAAGTGCGCCGTTCCGAACAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCGCCGTTTAAGACTGCCATTGTTGATATTATGTATGGCCAAGG
CATTTCCCAAAGCGGTGAACTTGTCGACATGGCAGTTGAAAAAGACATCATTGAAAAGGCGGGTTCATGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAGCACGCTAAAAGCTATCTTGAAACGCATGAGGAGCTGCGCCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCAGAAATGGAGACAGATACTATCACATC
TGCTGCATCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.424

94.286

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

70.783

94.857

0.671
  recA Streptococcus pneumoniae D39

68.997

94

0.649
  recA Streptococcus pneumoniae R6

68.997

94

0.649
  recA Streptococcus pneumoniae Rx1

68.997

94

0.649
  recA Streptococcus pneumoniae TIGR4

68.997

94

0.649
  recA Streptococcus pyogenes NZ131

69.207

93.714

0.649
  recA Streptococcus mitis NCTC 12261

68.693

94

0.646
  recA Streptococcus mitis SK321

68.693

94

0.646
  recA Streptococcus mutans UA159

68.693

94

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.867

94.857

0.634
  recA Acinetobacter baylyi ADP1

58.551

98.571

0.577
  recA Ralstonia pseudosolanacearum GMI1000

61.61

92.286

0.569
  recA Neisseria gonorrhoeae MS11

59.878

94

0.563
  recA Neisseria gonorrhoeae strain FA1090

59.878

94

0.563
  recA Neisseria gonorrhoeae MS11

59.878

94

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.286

0.56
  recA Acinetobacter baumannii D1279779

61.129

91.143

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.567

96.286

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.561

91.143

0.543
  recA Vibrio cholerae strain A1552

59.561

91.143

0.543
  recA Pseudomonas stutzeri DSM 10701

59.006

92

0.543
  recA Glaesserella parasuis strain SC1401

56.798

94.571

0.537
  recA Helicobacter pylori strain NCTC11637

53.779

98.286

0.529
  recA Helicobacter pylori 26695

53.488

98.286

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

93.714

0.514