Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MU539_RS04250 Genome accession   NZ_CP095384
Coordinates   865486..866727 (+) Length   413 a.a.
NCBI ID   WP_033571061.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain VHProbi M14     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 860486..871727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU539_RS04230 (MU539_04220) yfmH 861625..862917 (+) 1293 WP_033571058.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MU539_RS04235 (MU539_04225) ymfI 862917..863645 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  MU539_RS04240 (MU539_04230) - 863732..864667 (+) 936 WP_033571059.1 helix-turn-helix domain-containing protein -
  MU539_RS04245 (MU539_04235) pgsA 864664..865257 (+) 594 WP_033571060.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MU539_RS04250 (MU539_04240) cinA 865486..866727 (+) 1242 WP_033571061.1 competence/damage-inducible protein A Machinery gene
  MU539_RS04255 (MU539_04245) recA 866779..867831 (+) 1053 WP_033571062.1 recombinase RecA Machinery gene
  MU539_RS04260 (MU539_04250) rny 868353..869924 (+) 1572 WP_005684479.1 ribonuclease Y -
  MU539_RS04265 (MU539_04255) - 870013..870669 (-) 657 WP_152600903.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44484.13 Da        Isoelectric Point: 7.2504

>NTDB_id=676619 MU539_RS04250 WP_033571061.1 865486..866727(+) (cinA) [Lacticaseibacillus rhamnosus strain VHProbi M14]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLARYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=676619 MU539_RS04250 WP_033571061.1 865486..866727(+) (cinA) [Lacticaseibacillus rhamnosus strain VHProbi M14]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATCACGAATACAAATGGAGCGTATATGGCTAA
ACAACTGGCTACATTAGGAATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGATGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGATGCTATGGCCAAGTTGGCGGCGCGGGTTAAACAGCAGCA
ACGTCCAATGACACCCAATAATCGGTTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCACGAACTGTTGCCACGACTGGCAAGATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACGGATTTAAGTGATTTAATTGCCAATCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACGGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CTGGGGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCC
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGCCCTGATAAGCTGGAAGGACAGCCAGCTGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAACGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGTGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.019

100

0.53
  cinA Streptococcus mitis NCTC 12261

52.019

100

0.53
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.069

100

0.521
  cinA Streptococcus pneumoniae R6

51.069

100

0.521
  cinA Streptococcus pneumoniae D39

50.831

100

0.518
  cinA Streptococcus mutans UA159

51.202

100

0.516
  cinA Bacillus subtilis subsp. subtilis str. 168

44.417

99.758

0.443
  cinA Streptococcus suis isolate S10

41.799

91.525

0.383