Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIS3754_RS09880 Genome accession   NZ_AP017305
Coordinates   2385999..2387078 (+) Length   359 a.a.
NCBI ID   WP_062246405.1    Uniprot ID   A0A0S3TM41
Organism   Fischerella sp. NIES-3754     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2380999..2392078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIS3754_RS09860 (FIS3754_20780) - 2381401..2382678 (+) 1278 WP_062246399.1 ABC transporter ATP-binding protein -
  FIS3754_RS09865 (FIS3754_20790) - 2382821..2383822 (+) 1002 WP_062246401.1 glycosyltransferase -
  FIS3754_RS25385 (FIS3754_20800) - 2383886..2384059 (+) 174 WP_178379526.1 hypothetical protein -
  FIS3754_RS09870 (FIS3754_20810) xseB 2384106..2384345 (-) 240 WP_062246403.1 exodeoxyribonuclease VII small subunit -
  FIS3754_RS09875 (FIS3754_20820) xseA 2384338..2385606 (-) 1269 WP_062250512.1 exodeoxyribonuclease VII large subunit -
  FIS3754_RS09880 (FIS3754_20830) recA 2385999..2387078 (+) 1080 WP_062246405.1 recombinase RecA Machinery gene
  FIS3754_RS09885 (FIS3754_20840) - 2387304..2388038 (-) 735 WP_062246407.1 FHA domain-containing protein -
  FIS3754_RS09890 (FIS3754_20850) - 2388564..2390180 (-) 1617 WP_062246409.1 serine/threonine-protein kinase -
  FIS3754_RS24240 (FIS3754_20860) - 2390767..2390928 (+) 162 WP_071846737.1 metallothionein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38651.81 Da        Isoelectric Point: 4.9777

>NTDB_id=67641 FIS3754_RS09880 WP_062246405.1 2385999..2387078(+) (recA) [Fischerella sp. NIES-3754]
MAVNTDNAGKQKALNMVLNQIERTFGKGTIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTLAL
HAVAEVQKNGGIAAYVDAEHALDPTYAAALGVDTENLLVSQPDTGEAALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFLNQLRQKIGVSYGNPETTTGGNALKYYASVRLDIRRIQTLKKGTEE
FGNRVKVKVAKNKVAPPFRVAEFDIIFGRGISTLGCLVDLAEETGVLNRKGAWYSYNGDNISQGRDNAIKYLDEKPEFAE
QIKQLVREKLEKGAVVSANSVRKTNEDEDEDMDDASEEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=67641 FIS3754_RS09880 WP_062246405.1 2385999..2387078(+) (recA) [Fischerella sp. NIES-3754]
ATGGCTGTTAATACTGATAATGCTGGCAAGCAAAAAGCGCTCAACATGGTACTCAACCAGATTGAGCGTACTTTTGGTAA
AGGAACAATCATGCGCTTGGGCGACGCTACCCGGATGCGGGTAGAAACCATTTCCAGTGGGGCGCTGACATTGGATTTGG
CATTAGGCGGTGGTTTACCCAAAGGTCGAGTCATAGAGATTTATGGTCCAGAAAGTTCTGGTAAAACAACTTTAGCACTA
CACGCCGTTGCAGAAGTACAAAAAAATGGCGGAATTGCTGCCTACGTTGATGCAGAACACGCCCTCGACCCCACTTACGC
TGCGGCTTTAGGTGTAGATACAGAAAACTTATTGGTTTCTCAACCAGATACAGGAGAAGCAGCCTTAGAAATTGTCGATC
AACTCGTTCGCTCAGCAGCAGTAGATATAGTCGTCATTGACTCGGTAGCAGCCCTAGTTCCTCGCGCGGAAATCGAAGGT
GATATGGGTGATGCCCACGTTGGTCTTCAGGCAAGATTGATGAGCCAAGCTCTGCGTAAAATCACTGGTAATATTGGTAA
ATCTGGCTGCACAGTAATTTTCCTCAACCAGTTACGACAAAAAATTGGTGTCAGCTACGGTAATCCCGAAACTACAACTG
GTGGTAATGCTCTCAAATATTACGCTTCGGTACGCTTGGATATCCGTCGGATTCAAACCCTGAAAAAAGGAACTGAGGAA
TTCGGTAATCGCGTCAAAGTCAAAGTTGCTAAAAATAAAGTCGCCCCACCTTTTAGAGTTGCAGAATTTGACATTATTTT
TGGTAGAGGTATTTCTACCTTGGGTTGTCTTGTAGATTTAGCAGAAGAAACTGGCGTACTCAACCGCAAGGGAGCATGGT
ATAGCTACAATGGCGACAATATTTCTCAAGGTCGAGATAACGCCATTAAATACTTAGACGAAAAACCAGAATTTGCTGAA
CAAATTAAGCAACTAGTACGGGAAAAATTAGAAAAAGGAGCTGTTGTTTCCGCTAACTCTGTCAGGAAGACAAACGAAGA
CGAAGACGAAGATATGGATGATGCTTCTGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S3TM41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.17

94.986

0.591
  recA Acinetobacter baumannii D1279779

61.337

95.822

0.588
  recA Ralstonia pseudosolanacearum GMI1000

64.22

91.086

0.585
  recA Pseudomonas stutzeri DSM 10701

62.952

92.479

0.582
  recA Glaesserella parasuis strain SC1401

58.475

98.607

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

58.523

98.05

0.574
  recA Neisseria gonorrhoeae strain FA1090

63.75

89.136

0.568
  recA Neisseria gonorrhoeae MS11

63.75

89.136

0.568
  recA Neisseria gonorrhoeae MS11

63.75

89.136

0.568
  recA Helicobacter pylori strain NCTC11637

60.542

92.479

0.56
  recA Helicobacter pylori 26695

60.542

92.479

0.56
  recA Streptococcus mitis NCTC 12261

56.022

99.443

0.557
  recA Streptococcus mitis SK321

56.022

99.443

0.557
  recA Streptococcus mutans UA159

57.349

96.657

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

89.136

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

92.479

0.552
  recA Vibrio cholerae strain A1552

61.491

89.694

0.552
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

89.694

0.552
  recA Streptococcus pneumoniae D39

59.878

91.643

0.549
  recA Streptococcus pneumoniae Rx1

59.878

91.643

0.549
  recA Streptococcus pneumoniae R6

59.878

91.643

0.549
  recA Streptococcus pneumoniae TIGR4

59.878

91.643

0.549
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.681

89.972

0.546
  recA Streptococcus pyogenes NZ131

58.589

90.808

0.532
  recA Lactococcus lactis subsp. cremoris KW2

57.846

90.529

0.524
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.119

93.315

0.524

Multiple sequence alignment