Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JMUB0001_RS07480 | Genome accession | NZ_AP014956 |
| Coordinates | 1555688..1556740 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis strain TW2795 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1554128..1617875 | 1555688..1556740 | within | 0 |
Gene organization within MGE regions
Location: 1554128..1617875
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMUB0001_RS07480 (JMUB0001_1462) | recA | 1555688..1556740 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| JMUB0001_RS07485 (JMUB0001_1463) | - | 1556909..1558057 (-) | 1149 | WP_030064817.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| JMUB0001_RS07490 (JMUB0001_1464) | pgsA | 1558199..1558780 (-) | 582 | WP_002469863.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| JMUB0001_RS07495 (JMUB0001_1465) | - | 1558808..1559200 (-) | 393 | WP_030064815.1 | helix-turn-helix domain-containing protein | - |
| JMUB0001_RS07500 (JMUB0001_1466) | - | 1559219..1560046 (-) | 828 | WP_030064813.1 | YmfK family protein | - |
| JMUB0001_RS07505 (JMUB0001_1467) | - | 1560204..1560911 (-) | 708 | WP_023350378.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| JMUB0001_RS07510 (JMUB0001_1468) | - | 1560911..1562197 (-) | 1287 | WP_030064811.1 | pitrilysin family protein | - |
| JMUB0001_RS07515 (JMUB0001_1469) | - | 1562197..1563471 (-) | 1275 | WP_030064809.1 | pitrilysin family protein | - |
| JMUB0001_RS07520 (JMUB0001_1470) | - | 1563513..1564223 (-) | 711 | WP_002436349.1 | GntR family transcriptional regulator | - |
| JMUB0001_RS07525 (JMUB0001_1471) | - | 1564226..1566646 (-) | 2421 | WP_023350382.1 | DNA translocase FtsK | - |
| JMUB0001_RS07530 (JMUB0001_1472) | - | 1566904..1568577 (-) | 1674 | WP_002469869.1 | ribonuclease J | - |
| JMUB0001_RS07535 (JMUB0001_1473) | pnp | 1568811..1570910 (-) | 2100 | WP_030064806.1 | polyribonucleotide nucleotidyltransferase | - |
| JMUB0001_RS07540 (JMUB0001_1474) | rpsO | 1571228..1571497 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| JMUB0001_RS07545 (JMUB0001_1475) | ribF | 1571619..1572590 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| JMUB0001_RS07550 (JMUB0001_1476) | truB | 1572606..1573523 (-) | 918 | WP_002436304.1 | tRNA pseudouridine(55) synthase TruB | - |
| JMUB0001_RS07555 (JMUB0001_1477) | rbfA | 1573672..1574022 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| JMUB0001_RS07560 (JMUB0001_1478) | infB | 1574179..1576344 (-) | 2166 | WP_030064804.1 | translation initiation factor IF-2 | - |
| JMUB0001_RS07565 (JMUB0001_1479) | - | 1576349..1576666 (-) | 318 | WP_030064802.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| JMUB0001_RS07570 (JMUB0001_1480) | - | 1576663..1576947 (-) | 285 | WP_002436310.1 | YlxR family protein | - |
| JMUB0001_RS07575 (JMUB0001_1481) | nusA | 1576964..1578187 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| JMUB0001_RS07580 (JMUB0001_1482) | rimP | 1578208..1578675 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| JMUB0001_RS07585 (JMUB0001_1483) | - | 1578901..1583211 (-) | 4311 | WP_096389449.1 | PolC-type DNA polymerase III | - |
| JMUB0001_RS07590 (JMUB0001_1484) | - | 1583467..1585170 (-) | 1704 | WP_096389322.1 | proline--tRNA ligase | - |
| JMUB0001_RS07595 (JMUB0001_1485) | rseP | 1585190..1586476 (-) | 1287 | WP_030064796.1 | RIP metalloprotease RseP | - |
| JMUB0001_RS07600 (JMUB0001_1486) | - | 1586716..1587498 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| JMUB0001_RS07605 (JMUB0001_1487) | - | 1587502..1588272 (-) | 771 | WP_002436351.1 | isoprenyl transferase | - |
| JMUB0001_RS07610 (JMUB0001_1488) | frr | 1588553..1589107 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| JMUB0001_RS07615 (JMUB0001_1489) | pyrH | 1589125..1589847 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| JMUB0001_RS07620 (JMUB0001_1490) | tsf | 1589984..1590862 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| JMUB0001_RS07625 (JMUB0001_1491) | rpsB | 1591013..1591801 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| JMUB0001_RS07630 (JMUB0001_1492) | codY | 1592054..1592827 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| JMUB0001_RS07635 (JMUB0001_1493) | hslU | 1592850..1594253 (-) | 1404 | WP_002436320.1 | ATP-dependent protease ATPase subunit HslU | - |
| JMUB0001_RS07640 (JMUB0001_1494) | hslV | 1594337..1594879 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| JMUB0001_RS07645 (JMUB0001_1495) | xerC | 1594883..1595773 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| JMUB0001_RS07650 (JMUB0001_1496) | trmFO | 1596010..1597317 (-) | 1308 | WP_030064791.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| JMUB0001_RS07655 (JMUB0001_1497) | topA | 1597343..1599418 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| JMUB0001_RS07660 (JMUB0001_1498) | dprA | 1599596..1600468 (-) | 873 | WP_002436358.1 | DNA-processing protein DprA | Machinery gene |
| JMUB0001_RS07665 (JMUB0001_1499) | sucD | 1600694..1601602 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| JMUB0001_RS07670 (JMUB0001_1500) | sucC | 1601624..1602790 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| JMUB0001_RS07675 (JMUB0001_1501) | - | 1602898..1603668 (-) | 771 | WP_030064786.1 | ribonuclease HII | - |
| JMUB0001_RS07680 (JMUB0001_1502) | ylqF | 1603652..1604535 (-) | 884 | Protein_1466 | ribosome biogenesis GTPase YlqF | - |
| JMUB0001_RS07685 (JMUB0001_1503) | - | 1604815..1607415 (+) | 2601 | WP_096389324.1 | YfhO family protein | - |
| JMUB0001_RS07690 (JMUB0001_1504) | - | 1607408..1610020 (+) | 2613 | WP_030064780.1 | YfhO family protein | - |
| JMUB0001_RS07695 (JMUB0001_1505) | - | 1610460..1610699 (+) | 240 | WP_228116314.1 | hypothetical protein | - |
| JMUB0001_RS07700 (JMUB0001_1506) | - | 1610739..1611077 (+) | 339 | WP_030064776.1 | hypothetical protein | - |
| JMUB0001_RS07705 (JMUB0001_1507) | rplS | 1611654..1612004 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| JMUB0001_RS07710 (JMUB0001_1508) | trmD | 1612110..1612847 (-) | 738 | WP_030064770.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| JMUB0001_RS07715 (JMUB0001_1509) | rimM | 1612847..1613350 (-) | 504 | WP_030064768.1 | ribosome maturation factor RimM | - |
| JMUB0001_RS07720 (JMUB0001_1510) | rpsP | 1613613..1613888 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| JMUB0001_RS07725 (JMUB0001_1511) | ffh | 1614375..1615742 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| JMUB0001_RS07730 (JMUB0001_1512) | - | 1615772..1616104 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| JMUB0001_RS07735 (JMUB0001_1513) | ftsY | 1616091..1617350 (-) | 1260 | WP_030064764.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=67548 JMUB0001_RS07480 WP_002437037.1 1555688..1556740(-) (recA) [Staphylococcus capitis strain TW2795]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=67548 JMUB0001_RS07480 WP_002437037.1 1555688..1556740(-) (recA) [Staphylococcus capitis strain TW2795]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGATATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATCGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGATATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATCGAAGGTGAAATGGGAGAT
ACACATGTCGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.