Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ISX51_RS03870 Genome accession   NZ_CP094659
Coordinates   774745..775785 (+) Length   346 a.a.
NCBI ID   WP_029223240.1    Uniprot ID   A0A1R3EA59
Organism   Vibrio lentus strain ED252     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 769745..780785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS03855 (ISX51_03855) rpoS 770301..771281 (+) 981 WP_029223238.1 RNA polymerase sigma factor RpoS Regulator
  ISX51_RS03860 (ISX51_03860) mutS 771426..773987 (-) 2562 WP_102542815.1 DNA mismatch repair protein MutS -
  ISX51_RS03865 (ISX51_03865) pncC 774111..774605 (+) 495 WP_102383513.1 nicotinamide-nucleotide amidase -
  ISX51_RS03870 (ISX51_03870) recA 774745..775785 (+) 1041 WP_029223240.1 recombinase RecA Machinery gene
  ISX51_RS03875 (ISX51_03875) - 775935..776846 (-) 912 WP_281053362.1 winged helix-turn-helix domain-containing protein -
  ISX51_RS03880 (ISX51_03880) - 777077..777355 (+) 279 WP_017108701.1 hypothetical protein -
  ISX51_RS03885 (ISX51_03885) tpx 777526..778032 (+) 507 WP_017108702.1 thiol peroxidase -
  ISX51_RS03890 (ISX51_03890) - 778217..778705 (+) 489 WP_102279351.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37322.85 Da        Isoelectric Point: 5.0836

>NTDB_id=670477 ISX51_RS03870 WP_029223240.1 774745..775785(+) (recA) [Vibrio lentus strain ED252]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKSNSCKHLRENPEIALELDT
KLRELLLTPAVLEEKGAEKEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=670477 ISX51_RS03870 WP_029223240.1 774745..775785(+) (recA) [Vibrio lentus strain ED252]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCGATCATGCG
TCTTGGTGATAACCGTACAATGGACGTAGAAACTATTTCTACAGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTACCGATGGGACGTATCGTTGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGCTAACGCTTGAGCTTATTGCA
GCAGCGCAAAAAGTGGGCAAAACGTGTGCATTCGTTGATGCGGAACACGCACTTGACCCTATCTACGCTCAAAAGCTTGG
TGTTGATATCGACGCTTTGCTTGTGTCTCAACCAGATACAGGTGAACAAGCTCTAGAAATTTGTGATGCACTGGCTCGTT
CAGGTGCTATCGATGTTCTTGTTATTGACTCGGTTGCTGCACTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCAATGCGTAAGCTAACAGGTAACCTTAAGCAGTCTAACTGTAT
GGCTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTCGGTAATCCAGAAACAACAACAGGTGGTAATGCAC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGCCGTACTGGTGCAATCAAAGATGGTGATGAAGTTGTTGGTAACGAG
ACTCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCTGAAACTCAAATCCTTTATGGAAAAGGCTT
CAACCGCGAAGGTGAGCTTATCGATTTAGGTGTTAAGAATAAGCTAGTAGAGAAAGCGGGCGCTTGGTACAGCTACAAAG
GCGATAAGATCGGCCAAGGTAAATCGAACTCTTGTAAGCACCTACGTGAAAACCCAGAGATCGCTCTGGAACTTGACACT
AAGCTTCGTGAATTGCTACTGACTCCTGCTGTTCTTGAAGAGAAAGGCGCAGAGAAAGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EA59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

75.227

95.665

0.72
  recA Acinetobacter baumannii D1279779

72.174

99.711

0.72
  recA Acinetobacter baylyi ADP1

71.387

100

0.714
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae MS11

66.954

100

0.673
  recA Neisseria gonorrhoeae strain FA1090

66.954

100

0.673
  recA Glaesserella parasuis strain SC1401

67.442

99.422

0.671
  recA Ralstonia pseudosolanacearum GMI1000

71.111

91.04

0.647
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

92.197

0.59
  recA Streptococcus mutans UA159

58.166

100

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.775

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.665

0.575
  recA Helicobacter pylori strain NCTC11637

60.923

93.931

0.572
  recA Streptococcus pneumoniae TIGR4

61.3

93.353

0.572
  recA Streptococcus pneumoniae R6

61.3

93.353

0.572
  recA Streptococcus pneumoniae D39

61.3

93.353

0.572
  recA Streptococcus pneumoniae Rx1

61.3

93.353

0.572
  recA Streptococcus mitis NCTC 12261

60.991

93.353

0.569
  recA Helicobacter pylori 26695

60.615

93.931

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

57.647

98.266

0.566
  recA Streptococcus mitis SK321

60.681

93.353

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

92.775

0.564
  recA Streptococcus pyogenes NZ131

59.385

93.931

0.558
  recA Lactococcus lactis subsp. cremoris KW2

58.204

93.353

0.543