Detailed information NTG0670475

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ISX51_RS03855
• Genome accession: NZ_CP094659
• Coordinates: 770301..771281 (+)
• Length: 326 a.a.
• NCBI ID: WP_029223238.1
• Uniprot ID: A0A1R3EA79
• Organism: Vibrio lentus strain ED252
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 765301..776281

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ISX51_RS03825 (ISX51_03825)	ispD	765554..766255 (+)	702	WP_281053360.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ISX51_RS03830 (ISX51_03830)	ispF	766258..766737 (+)	480	WP_281053616.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ISX51_RS03835 (ISX51_03835)	truD	766760..767806 (+)	1047	WP_102279348.1	tRNA pseudouridine(13) synthase TruD	-
ISX51_RS03840 (ISX51_03840)	surE	767883..768626 (+)	744	WP_029223236.1	5'/3'-nucleotidase SurE	-
ISX51_RS03845 (ISX51_03845)	-	768627..769253 (+)	627	WP_281053361.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ISX51_RS03850 (ISX51_03850)	nlpD	769289..770203 (+)	915	WP_029223237.1	murein hydrolase activator NlpD	-
ISX51_RS03855 (ISX51_03855)	rpoS	770301..771281 (+)	981	WP_029223238.1	RNA polymerase sigma factor RpoS	Regulator
ISX51_RS03860 (ISX51_03860)	mutS	771426..773987 (-)	2562	WP_102542815.1	DNA mismatch repair protein MutS	-
ISX51_RS03865 (ISX51_03865)	pncC	774111..774605 (+)	495	WP_102383513.1	nicotinamide-nucleotide amidase	-
ISX51_RS03870 (ISX51_03870)	recA	774745..775785 (+)	1041	WP_029223240.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37246.48 Da
• Isoelectric Point: 5.4366

>NTDB_id=670475 ISX51_RS03855 WP_029223238.1 770301..771281(+) (rpoS) [Vibrio lentus strain ED252]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKAETKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=670475 ISX51_RS03855 WP_029223238.1 770301..771281(+) (rpoS) [Vibrio lentus strain ED252]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAGCCGAAACGAAAGAAGAGACTGAGGTTACATCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTATTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGTAACCGTGGTCT
TGCACTTCTCGATCTTATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGATCCAGAGCGTGGCTTCC
GTTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCAATTCATGTTGTGAAAGAGCTGAACATCTACCTGCGTACGGCACGAGAGTTATCACAAAAACTTGACCACGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCAGTCGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CCGTTGATACGCCTATCGGTGGTGATGGTGAGAAAGCGCTACTGGATATTATTCCGGACATCAATAACTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAATTCTTTGATTTTCTGGCTTGATGAGCTGAATCCTAAGCAGAAAGAGGTGCT
TGCGCGTCGCTTTGGATTACTTGGCTATGAACCATCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTAACTCGTGAAC
GTGTTCGCCAAATCCAAGTTGAAGGTCTGCGTCGTCTACGTGAGATTCTAATCAAGCAAGGCTTGAACATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

3D structure

• AlphaFold DB: A0A1R3EA79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834