Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   MOJ78_RS10215 Genome accession   NZ_CP094656
Coordinates   1990503..1990709 (+) Length   68 a.a.
NCBI ID   WP_370529790.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. AL-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1985503..1995709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOJ78_RS10190 (MOJ78_10170) - 1986042..1986299 (+) 258 WP_304981071.1 DUF3243 domain-containing protein -
  MOJ78_RS10195 (MOJ78_10175) - 1986592..1987365 (+) 774 WP_304981072.1 DUF3388 domain-containing protein -
  MOJ78_RS10200 (MOJ78_10180) - 1987382..1988269 (+) 888 WP_304981073.1 RodZ domain-containing protein -
  MOJ78_RS10205 (MOJ78_10185) pgsA 1988428..1989006 (+) 579 WP_304981074.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MOJ78_RS10210 (MOJ78_10190) cinA 1989160..1990407 (+) 1248 WP_304981075.1 competence/damage-inducible protein A Machinery gene
  MOJ78_RS10215 (MOJ78_10195) recA 1990503..1990709 (+) 207 WP_370529790.1 hypothetical protein Machinery gene
  MOJ78_RS10220 (MOJ78_10200) recA 1991070..1991912 (+) 843 Protein_1973 recombinase RecA -
  MOJ78_RS10225 (MOJ78_10205) rny 1992179..1993744 (+) 1566 WP_304981076.1 ribonuclease Y -
  MOJ78_RS10230 (MOJ78_10210) - 1993945..1994739 (+) 795 WP_304981077.1 TIGR00282 family metallophosphoesterase -
  MOJ78_RS10235 (MOJ78_10215) spoVS 1994840..1995100 (+) 261 WP_015758542.1 stage V sporulation protein SpoVS -

Sequence


Protein


Download         Length: 68 a.a.        Molecular weight: 7231.24 Da        Isoelectric Point: 8.5623

>NTDB_id=670387 MOJ78_RS10215 WP_370529790.1 1990503..1990709(+) (recA) [Alkalihalobacillus sp. AL-G]
MSDRKAALDMALRQIEKQFGKGSVMKLGEQTENRVSTSSSGSLALDIALGVGGYPRGRVIEVYGELSA

Nucleotide


Download         Length: 207 bp        

>NTDB_id=670387 MOJ78_RS10215 WP_370529790.1 1990503..1990709(+) (recA) [Alkalihalobacillus sp. AL-G]
ATGAGTGATCGTAAAGCAGCACTAGATATGGCATTACGACAAATCGAAAAGCAATTCGGTAAAGGATCTGTGATGAAGCT
GGGCGAACAAACGGAAAATCGTGTTTCGACTTCATCAAGCGGATCCCTTGCACTTGACATTGCACTAGGTGTAGGTGGCT
ACCCGAGAGGAAGAGTAATTGAGGTATATGGTGAACTATCAGCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.941

100

0.779

  recA Latilactobacillus sakei subsp. sakei 23K

66.667

97.059

0.647

  recA Streptococcus mutans UA159

64.179

98.529

0.632

  recA Streptococcus pyogenes NZ131

64.179

98.529

0.632

  recA Streptococcus pneumoniae Rx1

62.687

98.529

0.618

  recA Streptococcus pneumoniae D39

62.687

98.529

0.618

  recA Streptococcus pneumoniae R6

62.687

98.529

0.618

  recA Streptococcus pneumoniae TIGR4

62.687

98.529

0.618

  recA Streptococcus mitis SK321

62.687

98.529

0.618

  recA Streptococcus mitis NCTC 12261

62.687

98.529

0.618

  recA Lactococcus lactis subsp. cremoris KW2

61.194

98.529

0.603

  recA Neisseria gonorrhoeae strain FA1090

57.143

100

0.588

  recA Neisseria gonorrhoeae MS11

57.143

100

0.588

  recA Neisseria gonorrhoeae MS11

57.143

100

0.588

  recA Acinetobacter baylyi ADP1

57.971

100

0.588

  recA Acinetobacter baumannii D1279779

57.576

97.059

0.559

  recA Vibrio cholerae strain A1552

56.061

97.059

0.544

  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.061

97.059

0.544

  recA Glaesserella parasuis strain SC1401

56.923

95.588

0.544

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.065

91.176

0.529

  recA Pseudomonas stutzeri DSM 10701

54.545

97.059

0.529

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

52.239

98.529

0.515

  recA Ralstonia pseudosolanacearum GMI1000

62.963

79.412

0.5

  recA Helicobacter pylori strain NCTC11637

46.97

97.059

0.456

  recA Helicobacter pylori 26695

46.97

97.059

0.456

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.791

98.529

0.412