Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MQW34_RS18895 Genome accession   NZ_CP094455
Coordinates   3683050..3684081 (-) Length   343 a.a.
NCBI ID   WP_001283861.1    Uniprot ID   -
Organism   Bacillus sp. ZJS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3678050..3689081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQW34_RS18875 (MQW34_18905) - 3678656..3679579 (-) 924 WP_243498186.1 dipeptidase -
  MQW34_RS18880 (MQW34_18910) spoVS 3679638..3679898 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  MQW34_RS18885 (MQW34_18915) - 3680047..3680841 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  MQW34_RS18890 (MQW34_18920) rny 3681006..3682568 (-) 1563 WP_000099773.1 ribonuclease Y -
  MQW34_RS18895 (MQW34_18925) recA 3683050..3684081 (-) 1032 WP_001283861.1 recombinase RecA Machinery gene
  MQW34_RS18900 (MQW34_18930) cinA 3684226..3685464 (-) 1239 WP_243498188.1 competence/damage-inducible protein CinA Machinery gene
  MQW34_RS18905 (MQW34_18935) pgsA 3685485..3686063 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MQW34_RS18910 (MQW34_18940) - 3686127..3687038 (-) 912 WP_210625263.1 helix-turn-helix domain-containing protein -
  MQW34_RS18915 (MQW34_18945) - 3687060..3687845 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MQW34_RS18920 (MQW34_18950) - 3687985..3688233 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  MQW34_RS18925 (MQW34_18955) ymfI 3688309..3689022 (-) 714 WP_210625264.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37324.37 Da        Isoelectric Point: 4.9868

>NTDB_id=669643 MQW34_RS18895 WP_001283861.1 3683050..3684081(-) (recA) [Bacillus sp. ZJS3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGMEDPNLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=669643 MQW34_RS18895 WP_001283861.1 3683050..3684081(-) (recA) [Bacillus sp. ZJS3]
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACGGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGCGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAA
GTACAGCGCCAAGGTGGACAAGCAGCGTTCATCGATGCTGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAATATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCACTTGTACGAAGTG
GCGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCAAAAGCTGAGATCGAAGGAGACATGGGTGACTCA
CACGTAGGTCTACAAGCGCGTTTAATGTCTCAAGCGCTTCGTAAACTTTCAGGTGCAATTAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTTCGTCTTGAAGTGCGTCGTGCGGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGCGAGATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAGTTTTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCTGGTGCTGAAGGTATGGAAGATCCAAATCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.273

96.21

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mutans UA159

68.155

97.959

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.392

98.251

0.633
  recA Neisseria gonorrhoeae MS11

64.392

98.251

0.633
  recA Neisseria gonorrhoeae MS11

64.392

98.251

0.633
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Acinetobacter baylyi ADP1

60.87

100

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.044

0.606
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566

Multiple sequence alignment