Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MQW34_RS18900 Genome accession   NZ_CP094455
Coordinates   3684226..3685464 (-) Length   412 a.a.
NCBI ID   WP_243498188.1    Uniprot ID   -
Organism   Bacillus sp. ZJS3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3679226..3690464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQW34_RS18880 (MQW34_18910) spoVS 3679638..3679898 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  MQW34_RS18885 (MQW34_18915) - 3680047..3680841 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  MQW34_RS18890 (MQW34_18920) rny 3681006..3682568 (-) 1563 WP_000099773.1 ribonuclease Y -
  MQW34_RS18895 (MQW34_18925) recA 3683050..3684081 (-) 1032 WP_001283861.1 recombinase RecA Machinery gene
  MQW34_RS18900 (MQW34_18930) cinA 3684226..3685464 (-) 1239 WP_243498188.1 competence/damage-inducible protein CinA Machinery gene
  MQW34_RS18905 (MQW34_18935) pgsA 3685485..3686063 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MQW34_RS18910 (MQW34_18940) - 3686127..3687038 (-) 912 WP_210625263.1 helix-turn-helix domain-containing protein -
  MQW34_RS18915 (MQW34_18945) - 3687060..3687845 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MQW34_RS18920 (MQW34_18950) - 3687985..3688233 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  MQW34_RS18925 (MQW34_18955) ymfI 3688309..3689022 (-) 714 WP_210625264.1 elongation factor P 5-aminopentanone reductase -
  MQW34_RS18930 (MQW34_18960) yfmH 3689126..3690412 (-) 1287 WP_243498190.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45393.58 Da        Isoelectric Point: 4.8340

>NTDB_id=669644 MQW34_RS18900 WP_243498188.1 3684226..3685464(-) (cinA) [Bacillus sp. ZJS3]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGLEFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAERLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKELTLACAESLTGGLFGNQVTESAGVSSIFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVAFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=669644 MQW34_RS18900 WP_243498188.1 3684226..3685464(-) (cinA) [Bacillus sp. ZJS3]
ATGAACGCTGAAATCATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCTAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCGAATGATCATGGTATGG
CACCTGGTATGGGGTTAAATAAGAATGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTGGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACACCAAAATGTTGATGAAGCAGAGAGACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGAATTAACTTTAGCATGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAATATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCTGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTGTTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGCCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGTTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.537

99.515

0.583
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.946

98.786

0.454
  cinA Streptococcus suis isolate S10

41.005

91.748

0.376

Multiple sequence alignment