Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   MON12_RS12320 Genome accession   NZ_CP093424
Coordinates   2366472..2367503 (+) Length   343 a.a.
NCBI ID   WP_001283850.1    Uniprot ID   A0A1Y5ZML1
Organism   Bacillus pacificus strain MP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2361472..2372503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS12290 (MON12_12290) ymfI 2361531..2362244 (+) 714 WP_000759612.1 elongation factor P 5-aminopentanone reductase -
  MON12_RS12295 (MON12_12295) - 2362320..2362568 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  MON12_RS12300 (MON12_12300) - 2362708..2363493 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MON12_RS12305 (MON12_12305) - 2363515..2364426 (+) 912 WP_000137481.1 helix-turn-helix domain-containing protein -
  MON12_RS12310 (MON12_12310) pgsA 2364490..2365068 (+) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MON12_RS12315 (MON12_12315) cinA 2365089..2366327 (+) 1239 WP_074567377.1 competence/damage-inducible protein CinA Machinery gene
  MON12_RS12320 (MON12_12320) recA 2366472..2367503 (+) 1032 WP_001283850.1 recombinase RecA Machinery gene
  MON12_RS12325 (MON12_12325) rny 2367989..2369551 (+) 1563 WP_000099774.1 ribonuclease Y -
  MON12_RS12330 (MON12_12330) - 2369716..2370510 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  MON12_RS12335 (MON12_12335) spoVS 2370659..2370919 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  MON12_RS12340 (MON12_12340) - 2370978..2371901 (+) 924 WP_000688009.1 dipeptidase -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 37327.37 Da        Isoelectric Point: 4.9093

>NTDB_id=664627 MON12_RS12320 WP_001283850.1 2366472..2367503(+) (recA) [Bacillus pacificus strain MP6]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEDMEDPSLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=664627 MON12_RS12320 WP_001283850.1 2366472..2367503(+) (recA) [Bacillus pacificus strain MP6]
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCAGAGCGTAAAGTTTCTACGGTTTCTAGTGGTTCTTTAGCACTAGATGTGGCACTAGGAGTAGGCGGAT
ACCCACGTGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAA
GTACAGCGCCAAGGTGGACAAGCGGCATTCATCGATGCTGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAGGCACTTGTACGAAGTG
GTGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTCCCAAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTCTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTTCGTCTTGAAGTACGTCGTGCGGAGCAATTAAAACAAGGTAACGACATTGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCAGGTGCTGAAGATATGGAAGATCCAAGTCTTCTTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1Y5ZML1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.97

96.21

0.837

  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732

  recA Streptococcus pyogenes NZ131

70.427

95.627

0.673

  recA Streptococcus pneumoniae Rx1

69.697

96.21

0.671

  recA Streptococcus pneumoniae D39

69.697

96.21

0.671

  recA Streptococcus mitis NCTC 12261

69.697

96.21

0.671

  recA Streptococcus mitis SK321

69.697

96.21

0.671

  recA Streptococcus pneumoniae R6

69.697

96.21

0.671

  recA Streptococcus pneumoniae TIGR4

69.697

96.21

0.671

  recA Streptococcus mutans UA159

68.249

98.251

0.671

  recA Lactococcus lactis subsp. cremoris KW2

67.964

97.376

0.662

  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

98.251

0.621

  recA Acinetobacter baumannii D1279779

62.099

100

0.621

  recA Neisseria gonorrhoeae strain FA1090

65.337

95.044

0.621

  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621

  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621

  recA Acinetobacter baylyi ADP1

60.87

100

0.612

  recA Helicobacter pylori 26695

62.614

95.918

0.601

  recA Helicobacter pylori strain NCTC11637

62.614

95.918

0.601

  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595

  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595

  recA Vibrio cholerae strain A1552

63.551

93.586

0.595

  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566