Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MON12_RS12315 Genome accession   NZ_CP093424
Coordinates   2365089..2366327 (+) Length   412 a.a.
NCBI ID   WP_074567377.1    Uniprot ID   A0A1Y5ZL82
Organism   Bacillus pacificus strain MP6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2360089..2371327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON12_RS12285 (MON12_12285) yfmH 2360142..2361428 (+) 1287 WP_000411944.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MON12_RS12290 (MON12_12290) ymfI 2361531..2362244 (+) 714 WP_000759612.1 elongation factor P 5-aminopentanone reductase -
  MON12_RS12295 (MON12_12295) - 2362320..2362568 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  MON12_RS12300 (MON12_12300) - 2362708..2363493 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MON12_RS12305 (MON12_12305) - 2363515..2364426 (+) 912 WP_000137481.1 helix-turn-helix domain-containing protein -
  MON12_RS12310 (MON12_12310) pgsA 2364490..2365068 (+) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MON12_RS12315 (MON12_12315) cinA 2365089..2366327 (+) 1239 WP_074567377.1 competence/damage-inducible protein CinA Machinery gene
  MON12_RS12320 (MON12_12320) recA 2366472..2367503 (+) 1032 WP_001283850.1 recombinase RecA Machinery gene
  MON12_RS12325 (MON12_12325) rny 2367989..2369551 (+) 1563 WP_000099774.1 ribonuclease Y -
  MON12_RS12330 (MON12_12330) - 2369716..2370510 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  MON12_RS12335 (MON12_12335) spoVS 2370659..2370919 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45477.76 Da        Isoelectric Point: 5.1160

>NTDB_id=664626 MON12_RS12315 WP_074567377.1 2365089..2366327(+) (cinA) [Bacillus pacificus strain MP6]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGANVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VRYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=664626 MON12_RS12315 WP_074567377.1 2365089..2366327(+) (cinA) [Bacillus pacificus strain MP6]
ATGAATGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCCGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAGCGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGGGCAAATGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCAATGTAT
GTAAGGTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAGTTTTTCTACGGGTATGACCAAGAGTTTCTGCATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TATCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGTGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y5ZL82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381