Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MON10_RS12305 Genome accession   NZ_CP093423
Coordinates   2013734..2014765 (+) Length   343 a.a.
NCBI ID   WP_001283859.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008734..2019765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON10_RS12275 (MON10_12275) ymfI 2008778..2009491 (+) 714 WP_000759622.1 elongation factor P 5-aminopentanone reductase -
  MON10_RS12280 (MON10_12280) - 2009567..2009815 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  MON10_RS12285 (MON10_12285) - 2009955..2010740 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MON10_RS12290 (MON10_12290) - 2010762..2011688 (+) 927 WP_000137486.1 helix-turn-helix domain-containing protein -
  MON10_RS12295 (MON10_12295) pgsA 2011752..2012330 (+) 579 WP_001052963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MON10_RS12300 (MON10_12300) cinA 2012351..2013589 (+) 1239 WP_000990710.1 competence/damage-inducible protein CinA Machinery gene
  MON10_RS12305 (MON10_12305) recA 2013734..2014765 (+) 1032 WP_001283859.1 recombinase RecA Machinery gene
  MON10_RS12310 (MON10_12310) rny 2015251..2016813 (+) 1563 WP_000099774.1 ribonuclease Y -
  MON10_RS12315 (MON10_12315) - 2016978..2017772 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  MON10_RS12320 (MON10_12320) spoVS 2017921..2018181 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  MON10_RS12325 (MON10_12325) - 2018240..2019163 (+) 924 WP_000688035.1 dipeptidase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37355.38 Da        Isoelectric Point: 4.9093

>NTDB_id=664578 MON10_RS12305 WP_001283859.1 2013734..2014765(+) (recA) [Bacillus paranthracis strain SL1]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEDMEDPSLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=664578 MON10_RS12305 WP_001283859.1 2013734..2014765(+) (recA) [Bacillus paranthracis strain SL1]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACAGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCATTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATCGAGATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTTCATTACATGCAATTGCAGAG
GTACAGCGTCAAGGTGGACAAGCAGCATTCATCGATGCGGAGCATGCAATGGATCCTGTATATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCACTTGTACGAAGTG
GTGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAGATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTCTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTAA
AATTCTATTCAACTGTTCGTCTTGAAGTACGTCGTGCGGAGCAATTAAAACAAGGTAACGACATTGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGGCAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCAGGTGCTGAAGATATGGAAGATCCAAGTCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.273

96.21

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus mutans UA159

67.953

98.251

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Streptococcus mitis SK321

69.394

96.21

0.668
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.205

98.251

0.621
  recA Acinetobacter baumannii D1279779

62.099

100

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Neisseria gonorrhoeae MS11

65.337

95.044

0.621
  recA Acinetobacter baylyi ADP1

60.87

100

0.612
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566