Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MON10_RS12300 Genome accession   NZ_CP093423
Coordinates   2012351..2013589 (+) Length   412 a.a.
NCBI ID   WP_000990710.1    Uniprot ID   A0AAX3Q7Y1
Organism   Bacillus paranthracis strain SL1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2007351..2018589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON10_RS12270 (MON10_12270) yfmH 2007388..2008674 (+) 1287 WP_000411945.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MON10_RS12275 (MON10_12275) ymfI 2008778..2009491 (+) 714 WP_000759622.1 elongation factor P 5-aminopentanone reductase -
  MON10_RS12280 (MON10_12280) - 2009567..2009815 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  MON10_RS12285 (MON10_12285) - 2009955..2010740 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MON10_RS12290 (MON10_12290) - 2010762..2011688 (+) 927 WP_000137486.1 helix-turn-helix domain-containing protein -
  MON10_RS12295 (MON10_12295) pgsA 2011752..2012330 (+) 579 WP_001052963.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MON10_RS12300 (MON10_12300) cinA 2012351..2013589 (+) 1239 WP_000990710.1 competence/damage-inducible protein CinA Machinery gene
  MON10_RS12305 (MON10_12305) recA 2013734..2014765 (+) 1032 WP_001283859.1 recombinase RecA Machinery gene
  MON10_RS12310 (MON10_12310) rny 2015251..2016813 (+) 1563 WP_000099774.1 ribonuclease Y -
  MON10_RS12315 (MON10_12315) - 2016978..2017772 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  MON10_RS12320 (MON10_12320) spoVS 2017921..2018181 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45465.72 Da        Isoelectric Point: 5.2165

>NTDB_id=664577 MON10_RS12300 WP_000990710.1 2012351..2013589(+) (cinA) [Bacillus paranthracis strain SL1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRELLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=664577 MON10_RS12300 WP_000990710.1 2012351..2013589(+) (cinA) [Bacillus paranthracis strain SL1]
ATGAACGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCGACTGTATTTGCAAATGATCATGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACGGCTAAACATCAAAATGCTCATGAAGCGGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTTGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTACATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTTGGTAATCAAGTAACAGAAAACGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTC
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381