Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MM326_RS11270 Genome accession   NZ_CP093302
Coordinates   2093858..2094910 (-) Length   350 a.a.
NCBI ID   WP_099301002.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2088858..2099910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM326_RS11250 (MM326_11195) - 2090436..2091098 (-) 663 WP_099300998.1 ATPase -
  MM326_RS11255 (MM326_11200) - 2091091..2091342 (-) 252 WP_099300999.1 hypothetical protein -
  MM326_RS11260 (MM326_11205) - 2091339..2092772 (-) 1434 WP_099301000.1 AAA family ATPase -
  MM326_RS11265 (MM326_11210) - 2092759..2093748 (-) 990 WP_099301001.1 metallophosphoesterase -
  MM326_RS11270 (MM326_11215) recA 2093858..2094910 (-) 1053 WP_099301002.1 recombinase RecA Machinery gene
  MM326_RS11275 (MM326_11220) - 2095108..2096724 (-) 1617 WP_099301003.1 DEAD/DEAH box helicase -
  MM326_RS11280 (MM326_11225) cinA 2096721..2097974 (-) 1254 WP_255223336.1 competence/damage-inducible protein A Machinery gene
  MM326_RS11285 (MM326_11230) pgsA 2097986..2098564 (-) 579 WP_099301005.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MM326_RS11290 (MM326_11235) - 2098869..2099774 (-) 906 WP_099301006.1 RodZ family helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37961.12 Da        Isoelectric Point: 4.9352

>NTDB_id=663365 MM326_RS11270 WP_099301002.1 2093858..2094910(-) (recA) [Alkalihalobacillus sp. LMS6]
MSDRKQALDMALRQIEKQFGKGSVMKLGEQAEQRVSTVSSGALALDIALGVGGYPKGRVIEVYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAGKLGVNIDELLLSQPDTGEQALEIAEALVRSGALDMIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTVAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNDIVGNRT
KIKVVKNKVAPPFRLAEVDIMYGEGISREGSILDIGTDLEIVDKSGAWYSYNGDRLGQGRENSKQFLKENSEITLEIERK
IRDSHGLDGDVKVEEEEDKESFEDVPLDLK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=663365 MM326_RS11270 WP_099301002.1 2093858..2094910(-) (recA) [Alkalihalobacillus sp. LMS6]
ATGAGTGATCGTAAACAAGCGCTAGATATGGCATTACGCCAGATTGAGAAACAATTTGGAAAAGGCTCGGTAATGAAGTT
AGGTGAGCAAGCAGAACAGCGAGTTTCAACCGTTTCCAGTGGTGCACTCGCACTAGATATTGCATTAGGTGTAGGCGGCT
ACCCGAAAGGGAGAGTTATTGAAGTTTACGGTCCGGAATCTTCTGGTAAAACAACTGTTGCCCTTCATGCAATTGCAGAA
GTTCAGCGTCAAGGTGGTCAAGCTGCCTTTATTGATGCTGAGCATGCATTGGACCCGGTCTATGCTGGAAAACTTGGCGT
AAATATTGATGAATTGTTACTGTCTCAACCAGACACAGGCGAACAAGCATTAGAGATTGCAGAAGCGCTTGTACGAAGTG
GAGCTCTTGATATGATTGTAATCGATAGTGTCGCTGCTCTTGTTCCAAAAGCAGAAATTGAAGGGGAAATGGGCGATTCG
CACGTCGGTCTTCAAGCCCGTCTTATGTCGCAAGCGTTAAGAAAACTATCTGGTGCGATTAATAAATCAAAAACTGTGGC
AGTCTTCATCAACCAAATCCGTGAGAAAGTCGGCGTCATGTTTGGGAACCCAGAAACAACACCAGGTGGACGAGCGCTTA
AATTCTATTCATCTGTTCGTTTAGAAGTTCGTCGTGCGGAAGCGTTGAAGCAAGGGAACGACATTGTCGGAAACCGTACG
AAGATTAAAGTTGTTAAAAACAAAGTTGCGCCACCGTTCCGTTTAGCAGAAGTGGATATTATGTACGGGGAAGGGATTTC
TCGAGAAGGCTCAATCCTTGATATTGGGACTGATCTGGAAATTGTTGATAAGAGCGGTGCATGGTATTCCTATAACGGAG
ATCGTTTAGGCCAAGGTCGTGAAAACTCGAAGCAATTCTTAAAAGAAAACAGTGAAATCACATTAGAAATTGAACGGAAA
ATCCGCGACAGCCACGGTCTTGATGGCGATGTGAAAGTGGAAGAAGAAGAAGACAAGGAATCATTTGAGGATGTTCCACT
AGATTTAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.636

94.286

0.789
  recA Latilactobacillus sakei subsp. sakei 23K

68.876

99.143

0.683
  recA Streptococcus pneumoniae D39

64.917

100

0.671
  recA Streptococcus pneumoniae Rx1

64.917

100

0.671
  recA Streptococcus pneumoniae R6

64.917

100

0.671
  recA Streptococcus pneumoniae TIGR4

64.917

100

0.671
  recA Streptococcus mitis NCTC 12261

65.363

100

0.669
  recA Streptococcus mitis SK321

65.084

100

0.666
  recA Streptococcus mutans UA159

66.193

100

0.666
  recA Streptococcus pyogenes NZ131

68.598

93.714

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.964

96

0.643
  recA Neisseria gonorrhoeae MS11

63.188

98.571

0.623
  recA Neisseria gonorrhoeae MS11

63.188

98.571

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.188

98.571

0.623
  recA Ralstonia pseudosolanacearum GMI1000

66.049

92.571

0.611
  recA Acinetobacter baumannii D1279779

61.877

97.429

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.652

96.857

0.597
  recA Vibrio cholerae strain A1552

64.798

91.714

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

91.714

0.594
  recA Pseudomonas stutzeri DSM 10701

64.688

91.429

0.591
  recA Acinetobacter baylyi ADP1

63.889

92.571

0.591
  recA Helicobacter pylori strain NCTC11637

59.942

97.714

0.586
  recA Glaesserella parasuis strain SC1401

63.863

91.714

0.586
  recA Helicobacter pylori 26695

59.649

97.714

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.856

93.429

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.627

92

0.549