Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MM326_RS11280 Genome accession   NZ_CP093302
Coordinates   2096721..2097974 (-) Length   417 a.a.
NCBI ID   WP_255223336.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2091721..2102974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM326_RS11265 (MM326_11210) - 2092759..2093748 (-) 990 WP_099301001.1 metallophosphoesterase -
  MM326_RS11270 (MM326_11215) recA 2093858..2094910 (-) 1053 WP_099301002.1 recombinase RecA Machinery gene
  MM326_RS11275 (MM326_11220) - 2095108..2096724 (-) 1617 WP_099301003.1 DEAD/DEAH box helicase -
  MM326_RS11280 (MM326_11225) cinA 2096721..2097974 (-) 1254 WP_255223336.1 competence/damage-inducible protein A Machinery gene
  MM326_RS11285 (MM326_11230) pgsA 2097986..2098564 (-) 579 WP_099301005.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MM326_RS11290 (MM326_11235) - 2098869..2099774 (-) 906 WP_099301006.1 RodZ family helix-turn-helix domain-containing protein -
  MM326_RS11295 (MM326_11240) - 2099796..2100563 (-) 768 WP_099302118.1 DUF3388 domain-containing protein -
  MM326_RS11300 (MM326_11245) - 2100723..2100971 (-) 249 WP_099301007.1 DUF3243 domain-containing protein -
  MM326_RS11305 (MM326_11250) - 2101041..2101754 (-) 714 WP_099301008.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45556.94 Da        Isoelectric Point: 5.1902

>NTDB_id=663366 MM326_RS11280 WP_255223336.1 2096721..2097974(-) (cinA) [Alkalihalobacillus sp. LMS6]
MNAEIIAVGSELLLGQIANTNGQYISKQLASVGVDVYAHSVVGDNADRLYKTISDGFHRADLIILTGGLGPTKDDLTKDT
VAKFCERQLVYDEEALAHIEAYFKRHNRTMTPNNKKQAYVIEGSHVLANRYGMAPGMVVQLMNNKRIVLLPGPPSEMKPM
FENELLPLLLGTDEKTSITSRVLHFFGIGESQLETDLEDLIENQVNPTIAPLASDGEVKLRLTVKHDNQDEIKRLLDETE
SLIMARVGTYLYGYDETTLVKEVSRYLHEQQLTLASAESLTGGLFSSELIALPSASAIFKGSITAYTNDAKQALLSVSPQ
TLNEKGAVSEACAIEMAAGIQKHLQSDIAISFTGVAGPDTQEDLEPGTVILGLAMPGQEIRAIKLSLSGGRNAVRTRAVK
YGFFYLLDELKRRNGSK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=663366 MM326_RS11280 WP_255223336.1 2096721..2097974(-) (cinA) [Alkalihalobacillus sp. LMS6]
ATGAATGCAGAAATTATTGCTGTTGGTTCAGAATTATTGCTTGGGCAAATTGCGAATACAAACGGGCAGTATATTTCGAA
ACAGTTAGCAAGTGTAGGTGTTGATGTTTACGCTCATTCCGTAGTTGGGGACAATGCAGATCGGCTGTATAAAACCATTA
GCGATGGTTTTCATCGTGCCGATCTAATCATTCTTACTGGTGGGTTAGGGCCTACAAAGGACGATTTAACTAAAGATACG
GTCGCAAAGTTTTGTGAGCGACAACTTGTGTACGATGAGGAAGCGTTAGCCCATATTGAAGCGTATTTCAAACGACACAA
TCGAACGATGACGCCGAATAATAAAAAGCAAGCGTATGTCATTGAAGGCTCACATGTACTCGCAAATCGTTATGGAATGG
CACCGGGCATGGTCGTCCAACTAATGAACAATAAACGAATCGTTCTCTTACCTGGGCCACCAAGTGAGATGAAACCGATG
TTTGAAAATGAACTCTTGCCTCTCTTATTAGGTACAGATGAAAAAACATCGATTACCTCCAGAGTCCTTCACTTTTTTGG
TATCGGAGAATCACAGCTCGAAACGGATTTAGAAGACTTAATCGAAAACCAAGTGAACCCAACCATTGCACCGTTGGCAA
GTGATGGAGAAGTGAAATTACGTCTTACGGTTAAGCACGATAATCAGGATGAAATCAAGCGTTTGCTTGATGAAACAGAA
TCCCTTATCATGGCACGGGTAGGAACGTATTTATATGGCTATGATGAGACGACCCTTGTAAAAGAAGTATCTCGGTATTT
ACATGAGCAACAGCTTACATTGGCAAGTGCAGAAAGCTTAACAGGCGGGTTATTTTCAAGTGAGTTGATTGCATTACCTA
GTGCTTCCGCAATTTTTAAAGGAAGTATTACGGCATATACTAATGATGCAAAACAGGCACTGCTTTCTGTTTCACCGCAA
ACATTAAATGAAAAAGGCGCGGTCAGTGAAGCTTGCGCGATTGAAATGGCAGCTGGCATACAAAAGCATTTGCAGTCAGA
CATTGCCATTTCGTTTACAGGAGTAGCTGGTCCAGACACACAAGAGGATTTGGAGCCAGGGACCGTTATACTTGGATTAG
CTATGCCAGGACAAGAGATACGGGCAATTAAGCTTTCATTATCTGGTGGCAGAAACGCTGTTCGTACCCGAGCAGTGAAA
TACGGATTTTTCTATTTGTTGGATGAATTAAAAAGGAGAAATGGTAGTAAATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.488

99.281

0.571
  cinA Streptococcus mitis NCTC 12261

46.005

99.041

0.456
  cinA Streptococcus pneumoniae TIGR4

45.763

99.041

0.453
  cinA Streptococcus mitis SK321

45.521

99.041

0.451
  cinA Streptococcus mutans UA159

45.833

97.842

0.448
  cinA Streptococcus pneumoniae Rx1

45.278

99.041

0.448
  cinA Streptococcus pneumoniae R6

45.278

99.041

0.448
  cinA Streptococcus pneumoniae D39

45.036

99.041

0.446
  cinA Streptococcus suis isolate S10

42.105

91.127

0.384