Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MM300_RS00220 Genome accession   NZ_CP093301
Coordinates   47482..48525 (-) Length   347 a.a.
NCBI ID   WP_255243246.1    Uniprot ID   -
Organism   Evansella sp. LMS18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42482..53525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM300_RS00205 (MM300_00205) - 43793..44053 (-) 261 WP_078595664.1 stage V sporulation protein S -
  MM300_RS00210 (MM300_00210) - 44224..45018 (-) 795 WP_255243244.1 TIGR00282 family metallophosphoesterase -
  MM300_RS00215 (MM300_00215) rny 45505..47067 (-) 1563 WP_255243245.1 ribonuclease Y -
  MM300_RS00220 (MM300_00220) recA 47482..48525 (-) 1044 WP_255243246.1 recombinase RecA Machinery gene
  MM300_RS00225 (MM300_00225) - 48735..50315 (-) 1581 WP_255243247.1 DEAD/DEAH box helicase -
  MM300_RS00230 (MM300_00230) cinA 50318..51574 (-) 1257 WP_255243248.1 competence/damage-inducible protein A Machinery gene
  MM300_RS00235 (MM300_00235) pgsA 51596..52174 (-) 579 WP_255243249.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MM300_RS00240 (MM300_00240) - 52365..53276 (-) 912 WP_255243250.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37693.85 Da        Isoelectric Point: 5.0757

>NTDB_id=663306 MM300_RS00220 WP_255243246.1 47482..48525(-) (recA) [Evansella sp. LMS18]
MSDRKQALDMALRQIEKQFGKGSIMKLGEQAEQRVSTVSSGALALDIALGVGGYPKGRIVEIYGPESSGKTTVALHAIAE
VQRNGGQAAFVDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGQGISREGSILDIGSDLDIVQKSGAWYSYNEDRIGQGRENAKQFLRENPEITDAIDKQ
IREYHTLDAPKEIPADSEDEDMTLDFK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=663306 MM300_RS00220 WP_255243246.1 47482..48525(-) (recA) [Evansella sp. LMS18]
ATGTCAGATCGGAAACAAGCATTGGACATGGCCCTGCGCCAGATTGAGAAACAGTTCGGTAAAGGTTCAATCATGAAACT
CGGGGAACAGGCGGAACAAAGAGTATCAACTGTATCAAGTGGCGCCCTGGCCCTTGACATCGCTCTTGGTGTCGGAGGCT
ACCCTAAAGGAAGAATCGTAGAAATCTACGGCCCTGAATCTTCAGGTAAGACGACAGTAGCCCTTCATGCTATAGCAGAA
GTTCAGCGCAACGGTGGACAGGCTGCATTTGTGGATGCTGAGCACGCTCTCGACCCGGTATACGCACAGAAACTGGGTGT
AAACATCGACGAACTTCTTCTTTCCCAGCCGGATACAGGAGAGCAGGCGCTTGAGATTGCTGAAGCTCTTGTACGAAGCG
GAGCGGTCGACATTATTGTCGTGGACTCAGTGGCTGCCCTTGTACCTAAAGCGGAAATTGAAGGTGAAATGGGAGACAGC
CACGTTGGTTTGCAGGCAAGGTTAATGTCTCAGGCTTTGCGTAAGCTTTCCGGAGCTATTAACAAATCAAAAACTATCGC
AGTATTCATCAACCAGATTCGTGAAAAGGTTGGAGTTATGTTCGGGAATCCAGAAACAACTCCGGGCGGACGGGCATTAA
AGTTCTATTCCTCTGTAAGGCTTGAAGTACGCCGTGCGGAAACGTTAAAGCAGGGTAACGATATGGTCGGTAACAAGACG
AAAATAAAGGTTGTAAAGAATAAAGTTGCTCCTCCGTTTAAAGTAGCGGAAGTGGATATTATGTACGGACAAGGTATTTC
CCGTGAAGGCTCCATCCTCGACATCGGCTCAGACCTGGATATCGTCCAGAAGAGCGGCGCATGGTATTCCTATAACGAGG
ACCGTATAGGACAGGGCAGGGAGAATGCCAAACAGTTCCTGAGGGAAAATCCTGAGATCACAGATGCGATAGATAAGCAG
ATAAGAGAGTACCACACCCTTGATGCTCCGAAGGAAATTCCAGCGGATTCGGAAGATGAGGATATGACTCTCGATTTTAA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.061

94.524

0.804
  recA Latilactobacillus sakei subsp. sakei 23K

72.886

98.847

0.72
  recA Streptococcus mitis NCTC 12261

67.877

100

0.7
  recA Streptococcus mitis SK321

66.76

100

0.689
  recA Streptococcus mutans UA159

71.733

94.813

0.68
  recA Streptococcus pneumoniae Rx1

71.515

95.101

0.68
  recA Streptococcus pneumoniae D39

71.515

95.101

0.68
  recA Streptococcus pneumoniae R6

71.515

95.101

0.68
  recA Streptococcus pneumoniae TIGR4

71.515

95.101

0.68
  recA Streptococcus pyogenes NZ131

71.296

93.372

0.666
  recA Lactococcus lactis subsp. cremoris KW2

68.485

95.101

0.651
  recA Neisseria gonorrhoeae MS11

67.913

92.507

0.628
  recA Neisseria gonorrhoeae MS11

67.913

92.507

0.628
  recA Neisseria gonorrhoeae strain FA1090

67.913

92.507

0.628
  recA Vibrio cholerae strain A1552

67.601

92.507

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.601

92.507

0.625
  recA Glaesserella parasuis strain SC1401

62.069

100

0.622
  recA Acinetobacter baylyi ADP1

61.988

98.559

0.611
  recA Pseudomonas stutzeri DSM 10701

65.625

92.219

0.605
  recA Ralstonia pseudosolanacearum GMI1000

67.097

89.337

0.599
  recA Acinetobacter baumannii D1279779

63.863

92.507

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

92.507

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

94.236

0.582
  recA Helicobacter pylori 26695

61.18

92.795

0.568
  recA Helicobacter pylori strain NCTC11637

61.18

92.795

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.219

0.565