Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MM300_RS00230 Genome accession   NZ_CP093301
Coordinates   50318..51574 (-) Length   418 a.a.
NCBI ID   WP_255243248.1    Uniprot ID   -
Organism   Evansella sp. LMS18     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 45318..56574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM300_RS00215 (MM300_00215) rny 45505..47067 (-) 1563 WP_255243245.1 ribonuclease Y -
  MM300_RS00220 (MM300_00220) recA 47482..48525 (-) 1044 WP_255243246.1 recombinase RecA Machinery gene
  MM300_RS00225 (MM300_00225) - 48735..50315 (-) 1581 WP_255243247.1 DEAD/DEAH box helicase -
  MM300_RS00230 (MM300_00230) cinA 50318..51574 (-) 1257 WP_255243248.1 competence/damage-inducible protein A Machinery gene
  MM300_RS00235 (MM300_00235) pgsA 51596..52174 (-) 579 WP_255243249.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MM300_RS00240 (MM300_00240) - 52365..53276 (-) 912 WP_255243250.1 helix-turn-helix domain-containing protein -
  MM300_RS00245 (MM300_00245) - 53297..54070 (-) 774 WP_078595656.1 DUF3388 domain-containing protein -
  MM300_RS00250 (MM300_00250) - 54421..54669 (-) 249 WP_255243251.1 DUF3243 domain-containing protein -
  MM300_RS00255 (MM300_00255) - 54789..55523 (-) 735 WP_255243252.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45834.04 Da        Isoelectric Point: 4.9505

>NTDB_id=663307 MM300_RS00230 WP_255243248.1 50318..51574(-) (cinA) [Evansella sp. LMS18]
MNGEIVAVGSELLLGQIANTNAQFLSEQMNQLGINIYYHSVAGDNRERLAAVIENARKRCDLVVLTGGLGPTKDDLTKET
LAEVLGRELIYDETAKRRITDYFKKTGRYMAENNLQQALVIEGSVVFQNDNGLACGMAVKSDGCLFILLPGPPKELKPMF
NKYANPYLKSQLKDTTFIQSRVLRFFDIGESQLVEQIDDLIENQVNPTIAPLAGDGDVTLRLTVKGSDEAENQRKLNNLQ
EIVLARLDKYFYGLNDDSLFKQVFLQLKEGNVTIAAAESLTGGLFSAELTNIPGASAIFKGGFVTYTNEGKANTLNVAEE
ILHKHGAVSRECAEEMAKGARLKGESDYGISFTGVAGPDSSEGKPPGLVYIGIASREAAESYELRLAGSRTGVRERSVKY
GAYYLIQFLRKEMEKVDG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=663307 MM300_RS00230 WP_255243248.1 50318..51574(-) (cinA) [Evansella sp. LMS18]
ATGAATGGAGAAATAGTCGCAGTAGGATCTGAACTCCTTCTAGGCCAGATTGCCAATACAAATGCCCAGTTCCTTTCAGA
ACAGATGAACCAGCTTGGGATTAATATTTACTATCATTCCGTAGCAGGAGATAACCGGGAAAGGCTGGCAGCCGTTATCG
AAAACGCCCGTAAAAGATGCGATCTCGTAGTACTTACCGGAGGGCTTGGGCCTACCAAAGATGACTTAACAAAGGAAACA
TTAGCTGAAGTATTAGGCAGAGAACTAATATATGATGAAACTGCTAAAAGAAGAATAACTGATTACTTCAAGAAGACTGG
CAGGTACATGGCAGAAAATAATCTGCAGCAGGCGCTGGTTATTGAAGGATCTGTGGTTTTCCAGAACGACAATGGCCTGG
CATGCGGCATGGCTGTTAAATCGGATGGCTGTCTGTTCATCCTTCTGCCCGGGCCGCCGAAGGAATTAAAGCCAATGTTC
AATAAGTATGCAAACCCGTATTTAAAAAGCCAGCTGAAGGATACAACTTTCATTCAGTCAAGAGTGCTCCGTTTTTTTGA
TATTGGTGAATCCCAGCTTGTGGAGCAGATCGATGACTTAATTGAAAACCAGGTGAATCCCACGATTGCTCCCCTTGCCG
GAGATGGTGACGTAACACTGCGTTTAACAGTAAAAGGCAGCGACGAAGCGGAGAACCAAAGGAAGCTTAATAATCTGCAG
GAAATCGTTCTTGCCCGGCTTGATAAGTATTTCTATGGTTTAAATGATGACTCACTCTTTAAGCAGGTATTCCTGCAGCT
TAAAGAGGGAAATGTGACGATTGCAGCTGCTGAGAGCCTTACAGGCGGTCTCTTTTCTGCAGAGTTAACAAATATCCCGG
GAGCTTCCGCTATCTTTAAAGGCGGCTTTGTGACGTATACAAATGAAGGGAAAGCGAATACCCTCAATGTAGCTGAGGAG
ATTCTTCACAAACACGGGGCAGTCAGCCGGGAATGCGCTGAGGAGATGGCAAAGGGAGCAAGGCTAAAGGGAGAATCTGA
TTACGGGATAAGCTTTACAGGCGTGGCCGGACCGGATTCTTCTGAAGGGAAGCCTCCCGGGCTCGTCTATATTGGTATTG
CTTCCCGGGAAGCTGCGGAAAGCTATGAGCTCAGGCTTGCTGGAAGCAGAACTGGTGTGAGAGAGCGTTCCGTTAAATAT
GGAGCGTATTATTTGATACAATTCTTGCGTAAGGAAATGGAAAAGGTGGATGGATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-407)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.79

97.847

0.526
  cinA Streptococcus mutans UA159

49.029

98.565

0.483
  cinA Streptococcus pneumoniae TIGR4

46.523

99.761

0.464
  cinA Streptococcus mitis SK321

46.283

99.761

0.462
  cinA Streptococcus mitis NCTC 12261

46.043

99.761

0.459
  cinA Streptococcus pneumoniae Rx1

46.043

99.761

0.459
  cinA Streptococcus pneumoniae R6

46.043

99.761

0.459
  cinA Streptococcus pneumoniae D39

45.803

99.761

0.457
  cinA Streptococcus suis isolate S10

42.602

93.78

0.4